Distinct RNA-RNA spatial interaction sub-networks of tran-scription factors in human hepatoma cells
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ABSTRACT: We applied the latest RIC-seq technology to study the RNA-RNA interactions in human liver HepG2 cells. Integrating ChIP-seq data with the RIC-seq data, we clas-sified various transcription factors (TFs) into three distinct clusters based on the spatial interaction levels of the uaRNA (RNA transcribed in promoter regions) and eRNA (RNA transcribed in enhancer regions) potentially transcribed by the TF binding sites.
ORGANISM(S): Homo sapiens
PROVIDER: GSE286140 | GEO | 2025/01/12
REPOSITORIES: GEO
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