Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Populus homeobox gene ARK1 overexpression

ABSTRACT: The Populus homeobox gene ARBORKNOX1 was overexpressed behind the cauliflower mosaic virus 35S promoter in clone INRA 717 P. alba X P. tremula. The experiment here compares gene expression in defoliated stems of two independently transformed clones (mutants) versus wild type controls. Keywords: mutant versus wildtype

ORGANISM(S): Populus tremula x Populus alba Populus trichocarpa

PROVIDER: GSE2929 | GEO | 2005/09/01

SECONDARY ACCESSION(S): PRJNA92625

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Populus homeobox gene ARK2 overexpression

Project description:The Populus homeobox gene ARBORKNOX2 was overexpressed behind the cauliflower mosaic virus 35S promoter in clone INRA 717 P. alba X P. tremula. The experiment here compares gene expression in defoliated stems of two independently transformed clones (mutants) versus wild type controls. Keywords: mutant versus wildtype

2005-10-01 | GSE3027 | GEO

Effect of Methyl jasmonate of the Poplar root transcriptome

Project description:Illumina HiSeq technology was used to generate mRNA profiles from Populus tremula x alba INRA 717-1B4 roots treated with Methyl jasmonate. Samples were harvested after two weeks either from untreated control roots or from Methyl jasmonate treated roots. Paired-end (2X100bp) reads were generated and aligned to the Populus trichocarpa (http://www.phytozome.net/poplar.php) using CLC Genomics Workbench 6. mRNA profiles from Populus tremula x alba INRA 717-1B4 roots treated with Methyl jasmonate as well as from control roots were generated by paired-end (2X100bp) Illumina HiSeq sequencing. Four samples were sequenced per lane, two biological replicates per treatment.

2014-04-17 | E-GEOD-56864 | biostudies-arrayexpress

Effect of Methyl jasmonate of the Poplar root transcriptome

2014-04-17 | GSE56864 | GEO

Changes in gene expression in the bark of MIR15

Project description:Illumina HiSeq technology was used to generate mRNA profiles of bark from MIR15 compared to wildtype plants. Wild type (WT) and transgenic poplars (Populus tremula x P. alba, clone INRA 717-1B4) were grown aseptically on Woody Plant Medium. Total RNA was extracted using Tri-Reagent according to the manufacturer’s instructions. Reads of 2X100bp were generated and aligned to Populus trichocarpa v3.0 reference transcripts (http://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Ptrichocarpa; Ptrichocarpa_210_transcript_primaryTranscriptOnly) using CLC Genomics Workbench 7.

2015-05-07 | GSE68595 | GEO

Ethylene and jasmonic acid act as negative modulators during mutualistic symbiosis between Laccaria bicolor and Populus roots

Project description:The Poplar transcriptome was analyzed in mycorrhizal root tips in contact with Laccaria bicolor for 2 weeks. During mycorrhization the roots were treated with either 250M-BM-5m ACC, 10nM JA or 500M-BM-5M SA and compared to untreated mycorrhiza or control roots without contact to L. bicolor. In addition the poplar mutants 35S::PttACO1 and 35S::Atetr1 were used We performed 27 hybridizations (NimbleGen) with samples derived from Populus tremula x Populus alba clone 717-1B4 control roots, untreated mycorrhiza, SA-treated mycorrhiza, ACC-treated mycorrhiza and JA-treated mycorrhiza (3 biological replicates each) as well as Populus tremula x Populus tremuloides T89 control roots, mycorrhiza, 35S::PttACO1 mycorrhiza and 35S::Atetr1-1 mycorrhiza (3 biological replicates). All samples were labeled with Cy3.

2013-12-19 | E-GEOD-53475 | biostudies-arrayexpress

Changes in gene expression in the bark of MIR15

2015-05-07 | E-GEOD-68595 | biostudies-arrayexpress

Single nuclei transcriptomic of Populus tremula x alba apex

Project description:Here we applied a novel approach to isolate nuclei from complex plant tissues (https://doi.org/10.1371/journal.pone.0251149), to dissect the transcriptome profiling of the hybrid poplar (Populus tremula × alba) vegetative shoot apex at single-cell resolution.

2022-10-04 | GSE190649 | GEO

Time Course of Laccaria bicolor S238N and Populus tremula x alba 717-1B4 in vitro ectomycorrhizal development

Project description:Illumina technology was used to generate mRNA profiles of a time course of Laccaria bicolor S238N and Populus tremula x alba 717-1B4 in vitro ectomycorrhizal development. Total RNA was extracted, TruSeq mRNA Stranded libraries were constructed and and sequenced in triplicates (2 x 150 bp Illumina HiSeq3000) at the Genotoul sequencing facilities (Toulouse, France). Raw reads were trimmed for low quality (quality score 0.05), Illumina adapters and sequences shorter than 15 nucleotides and aligned to the L. bicolor v2 reference transcripts available at the JGI database https://mycocosm.jgi.doe.gov/Lacbi2/Lacbi2.home.html using CLC Genomics Workbench v8.

2021-12-15 | GSE190443 | GEO

Populus tremula x Populus alba cultivar:717-1B4

Project description:Populus tremula x alba INRA 717-1B4 WT Resequencing

| PRJNA566962 | ENA

Populus tissue analysis

Project description:We analyzed the transcriptome in roots, young and mature leaves, nodes and internodes in the reference genotype Nisqually-1 and identified a core set of approximately 10,000 genes expressed in common among vegetative organs. Quantitative contrasts of transcript levels among organs identified expected patterns of expression associated with organ-specific physiological processes, although a surprisingly high number of defense-related genes were preferentially expressed in young leaves and nodes. Application of a novel runs test established an objective criterion for the identification of genomic regions in which adjacent genes were expressed more frequently than expected by chance, suggesting the presence of chromatin domains. Comparisons between P. trichocarpa Nisqually-1 and the P. tremula X P. alba hybrid INRA 717-1B4 revealed similar expression patterns, particularly in stems. Although a comparison to Arabidopsis thaliana revealed similar proportions of expressed genes in leaves and stems, there was very little conservation between rank correlations of expression patterns. Keywords: gene expression

2006-12-25 | GSE6422 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data