Genomics

Dataset Information

0

MiRNAs target conserved motifs of diverse genes encoding NB-LRRs to trigger trans-acting siRNAs in legumes.


ABSTRACT: Trans-acting siRNAs (tasiRNAs) negatively regulate target transcripts and are characterized by siRNAs spaced in 21-nucleotide 'phased' intervals. TasiRNAs have not been extensively described in many plant species. We identified dozens of new miRNAs in Medicago and soybean and confirmed 119 Medicago targets. A search for phased tasiRNA-like small RNAs ('phasiRNAs') found at least 114 Medicago loci, the majority of which were NB-LRR encoding genes. Notably, conserved domains in NB-LRR-encoding RNAs are targeted by several 22-nt miRNA families to trigger phasiRNA production. DCL2 and SGS3 transcripts were also cleaved by these 22-nt miRNAs, generating phased small RNAs, suggesting synchronization between silencing and pathogen defense pathways. A second example of 'two-hit' phasiRNA processing was identified, utilizing miR156-miR172 sites. Our data illustrate a complex tasiRNA-mediated regulatory circuit that potentially modulates plant-microbe interactions. A few miRNA triggers regulate an extremely large gene family by targeting highly conserved protein motif-encoding sequences, representing a new paradigm for miRNA function.

ORGANISM(S): Arachis hypogaea Glycine max Phaseolus vulgaris Medicago truncatula

PROVIDER: GSE31061 | GEO | 2011/10/24

SECONDARY ACCESSION(S): PRJNA146213

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2011-10-24 | E-GEOD-31061 | biostudies-arrayexpress
2015-06-20 | GSE67613 | GEO
2015-04-15 | E-GEOD-56859 | biostudies-arrayexpress
2015-04-15 | GSE56859 | GEO
2014-11-20 | E-GEOD-50557 | biostudies-arrayexpress
2014-11-20 | GSE50557 | GEO
2018-10-09 | GSE111239 | GEO
2018-10-09 | GSE111238 | GEO
2012-03-29 | E-GEOD-22763 | biostudies-arrayexpress
2017-02-16 | GSE89345 | GEO