ENCODE SUNY RNA Binding Protein GeneST Data for HepG2
Ontology highlight
ABSTRACT:
ORGANISM(S): Homo sapiens
PROVIDER: GSE31720 | GEO | 2011/09/19
REPOSITORIES: GEO
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Project description:RNA Binding Protein immunoprecipitation study for multiple target proteins in HepG2 cell line as part of the ENCODE consortium. Analyzed data tracks available for view on UCSC Genome browser. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Three sample replicates per sample type. Total input RNA and Negative target RIP (antibody for bacteriophage coat protein) are provided as controls. Individual samples reflect biological replicates defined as separate RIP runs (as opposed to technical replicate defined as multiple arrays run with same RIP sample as starting material)
2011-09-18 | E-GEOD-31720 | biostudies-arrayexpress
Project description:RNA Binding Protein immunoprecipitation study for multiple target proteins in GM12878 cell line as part of the ENCODE consortium. Analyzed data tracks available for view on UCSC Genome browser. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Three sample replicates per sample type. Total input RNA and Negative target RIP (antibody for bacteriophage coat protein) are provided as controls. Individual samples reflect biological replicates defined as separate RIP runs (as opposed to technical replicate defined as multiple arrays run with same RIP sample as starting material)
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Project description:RNA Binding Protein immunoprecipitation study for multiple target proteins in K562 cell line as part of the ENCODE consortium. Analyzed data tracks available for view on UCSC Genome browser. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Three sample replicates per sample type. Total input RNA and Negative target RIP (antibody for bacteriophage coat protein) are provided as controls. Individual samples reflect biological replicates defined as separate RIP runs (as opposed to technical replicate defined as multiple arrays run with same RIP sample as starting material)
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Project description:This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Scott Tenenbaum mailto:STenenbaum@uamail.albany.edu). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). The RNA binding protein (RBP) associated mRNA sequencing track (RIP-Seq) is produced as part of the Encyclopedia of DNA Elements (ENCODE) Project (http://hgwdev.cse.ucsc.edu/ENCODE/index.html). This track displays transcriptional fragments associated with RBP in cell lines (http://hgwdev.cse.ucsc.edu/cgi-bin/hgEncodeVocab?type=cellType) K562 and GM12878, using Ribonomic profiling via Illumina SBS. In eukaryotic organisms gene regulatory networks require an additional level of coordination that links transcriptional and post-transcriptional processes. Messenger RNAs have traditionally been viewed as passive molecules in the pathway from transcription to translation. However, it is now clear that RNA-binding proteins play a major role in regulating multiple mRNAs in order to facilitate gene expression patterns. These tracks show the associated mRNAs that co-precipitate with the targeted RNA-binding proteins using RIP-Seq profiling. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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