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SNP6.0 copy number analysis of eight diffuse large B-cell samples and one matched blood sample

ABSTRACT: We performed a comparison analysis of the Affymetrix arrays SNP6.0 genome wide array (SNP6.0) and cytogenetic 2.7M whole-genome array (Cyto2.7M) using nine human samples. We compared the two array types with respect to four parameters including the size and breakpoints of the alterations detected, the actual CN assigned to the CNVs as well as long stretches of loss of heterozygosity. Overall, we found very good consistency between the two types of array on all parameters compared, even in regions with very complex changes. This GEO submission contains the SNP6.0 data. GEO submission, GSE37978 contains the Cyto2.7M data.

ORGANISM(S): Homo sapiens

PROVIDER: GSE37977 | GEO | 2012/11/26

SECONDARY ACCESSION(S): PRJNA167158

REPOSITORIES: GEO

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Cyto2.7M copy number analysis of eight diffuse large B-cell samples and one matched blood sample

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