Genomics

Dataset Information

0

Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs: Phytophthora infestans small RNA


ABSTRACT: Deep sequencing of small RNAs from three Phytophthora species, P. infestans, P. ramorum and P. sojae, was done to systematically analyze small RNA-generating components of Phytophthora genomes. We found that each species produces two distinct small RNA populations that are predominantly 21- or 25-nucleotides long. We present evidence that 25-nucleotide small RNAs are short-interfering RNAs that silence repetitive genetic elements. In contrast, 21-nucleotide small RNAs are associated with inverted repeats, including a novel microRNA family, and may function at the post-transcriptional level.

ORGANISM(S): Phytophthora infestans

PROVIDER: GSE50030 | GEO | 2013/10/21

SECONDARY ACCESSION(S): PRJNA215846

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2013-10-21 | E-GEOD-50031 | biostudies-arrayexpress
2013-10-21 | GSE50032 | GEO
2013-10-21 | GSE50031 | GEO
2013-10-21 | E-GEOD-50030 | biostudies-arrayexpress
2013-10-21 | E-GEOD-50032 | biostudies-arrayexpress
2012-03-01 | E-GEOD-36178 | biostudies-arrayexpress
| PRJNA215844 | ENA
| PRJNA152919 | ENA
| PRJNA427329 | ENA
| PRJNA177509 | ENA