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Genome-wide profiling of H3K4me3 and H3K27me3 enrichment and mRNA levels in young leaves of Arabidopsis thaliana

ABSTRACT: Chromatin and RNA were extracted from young A. thaliana Col-0 rosette leaves. Chromatin immunoprecipitation experiments were performed using commercially available antibodies and analyzed by Illumina sequencing (ChIP-seq). Transcriptome data were generated by RNA-seq.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE50636 | GEO | 2014/01/27

SECONDARY ACCESSION(S): PRJNA218138

REPOSITORIES: GEO

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Genome-wide profiling of H3K4me3 and H3K27me3 enrichment and mRNA levels in young leaves of Arabidopsis thaliana

Project description:Chromatin and RNA were extracted from young A. thaliana Col-0 rosette leaves. Chromatin immunoprecipitation experiments were performed using commercially available antibodies and analyzed by Illumina sequencing (ChIP-seq). Transcriptome data were generated by RNA-seq. ChIP-seq analysis of H3K4me3 and H3K27me3 enrichment profiles in 2 biological replicates. RNA-seq analysis of mRNA levels in 1 biological replicate.

2014-01-27 | E-GEOD-50636 | biostudies-arrayexpress

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Genome-wide profiling of H3K4me3, H3K27me3 H3K27me1 and 5mC enrichment and mRNA levels in young leaves of Arabidopsis lyrata

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Genome-wide profiling of H3K27me1 and 5mC enrichment in young leaves of Arabidopsis thaliana

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Genome-wide profiling of H3K27me1 and 5mC enrichment in young leaves of Arabidopsis thaliana

Project description:Chromatin, DNA and RNA were extracted from young A. thaliana primary stem leaves. Chromatin and DNA methylation immunoprecipitation experiments were performed using commercially available antibodies and analyzed by Illumina sequencing (ChIP-seq and MeDIP-seq). ChIP-seq analysis of H3K27me1 enrichment profiles and MeDIP-seq analysis of 5mC enrichment profiles in 2 biological replicates.

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Genome-wide profiling of H3K4me3, H3K27me3 H3K27me1 and 5mC enrichment and mRNA levels in young leaves of Arabidopsis thaliana, Arabis alpina and Arabidopsis lyrata.

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

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Root and rosette leaves transcriptome of Arabidopsis Col-0 and nrt1.5 mutant

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