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DRNA-seq of Shewanella oneidensis MR-1

ABSTRACT: We combined high-resolution tiling microarrays and 5'-end RNA sequencing to obtain a genome-wide map of transcription start sites (TSSs) for Shewanella oneidensis MR-1. To test the reliability of these TSSs, we compared our result to those from differential RNA sequencing (dRNA-seq), which discriminates primary and processed ends of transcripts. We found that our identified TSSs tend to have significantly more mapped reads in the TEX(+) sample than the TEX(-) sample. Overall, the dRNA-seq results support the validity of our predictions for TSS.

ORGANISM(S): Shewanella oneidensis MR-1

PROVIDER: GSE58292 | GEO | 2014/06/12

SECONDARY ACCESSION(S): PRJNA251904

REPOSITORIES: GEO

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