Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptional analyses of wheat responses to the necrotrophic effector SnTox3

ABSTRACT: Wheat (Triticum aestivum) was infiltrated with the Stagonospora nodorum effector protein SnTox3 to identify differentially regulated genes.

ORGANISM(S): Triticum aestivum

PROVIDER: GSE59723 | GEO | 2014/07/25

SECONDARY ACCESSION(S): PRJNA256040

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcriptional analyses of wheat responses to the necrotrophic effector SnTox3

Project description:Wheat (Triticum aestivum) was infiltrated with the Stagonospora nodorum effector protein SnTox3 to identify differentially regulated genes. SnTox3 was isolated from P. pastoris expression strains, purified and infiltrated into the susceptible wheat line BG220. Samples were collected 6, 12, 24 and 48 hours post infiltration (hpi) in biological triplicates. Total RNA was isolated and used for microarray analysis with the Affymetrix GeneChip Wheat Genome Array following the manufactures instructions. Resulting data were analysed using the Partek Genomics Suite.

2014-07-25 | E-GEOD-59723 | biostudies-arrayexpress

Wheat Freeze-Tolerance

Project description:Comparison of gene expression levels in non-hardened (NH), cold-hardened (CH) and subzero-hardened (SZH) Triticum aestivum L. cv Jackson crowns with Affymetrix GeneChip Barley Genome Array. Keywords = wheat Keywords = crowns Keywords = cold tolerance Keywords = freezing resistance Keywords = Triticum aestivum L. cv Jackson Keywords: repeat sample

2005-01-20 | GSE2166 | GEO

RNA-seq analysis of bread wheat grown under hydroponic Fe deficient conditions

Project description:Bread wheat (Triticum aestivum L., cv. Fielder) plants were grown under iron (Fe) deficient hydroponic conditions to analyise transcriptomic changes in leaf and root tissue.

2024-12-11 | GSE283676 | GEO

Wheat transcriptomic changes in response to Trichoderma harzianum and/or nitrogen supplies

Project description:We used microarrays to detail the Triticum aestivum response to T34 in the presence of different CN concentrations as nitrogen source. Affymdetrix wheat genome array (platform GPL3802) was used.

2022-07-25 | GSE134903 | GEO

The effect of cold and hydrogen peroxide in wheat.

Project description:One day cold (14 and 19 °C) and hydrogen peroxide (H2O2) treatment of wheat (Triticum aestivum ssp. aestivum L.) variety Chinese Spring and two chromosome 5A substitution lines of Chinese Spring, Chinese Spring(T. ae. ssp. aestivum L. Cheyenne 5A) and Chinese Spring(T. ae. ssp. spelta L. 5A).

2018-09-28 | E-MTAB-6627 | biostudies-arrayexpress

A circadian transcriptional sub-network and EARLY FLOWERING 3 control timing of senescence and grain nutrition in bread wheat

Project description:Bread wheat (Triticum aestivum cv. Mace) mature and senescent flag leaves were collected over a 48 h time course in continuous conditions to investigate changes in circadian clock regulation that occur during leaf senescence.

2024-02-27 | GSE259431 | GEO

Study comprehensive changes in gene expression profile under different pH stresses in wheat roots

Project description:To study the transcriptional profiling of seedling roots under different solution pH stresses in winter wheat (Triticum aestivum L.). We identify genes that are differentially expressed in response to different solution pH (4.0 and 10.0) comparing with control pH 6.5 using microarray technology.

2018-12-31 | GSE108361 | GEO

The effect of short-term cold treatment in wheat.

Project description:One day cold treatment of wheat (Triticum aestivum L.) lines Chinese Spring, Cheyenne and two 5A chromosome substitution lines of Chinese Spring, Chinese Spring(Cheyenne 5A) and Chinese Spring(Spelta 5A)

2016-10-22 | E-MTAB-3937 | biostudies-arrayexpress

Light effect on the hormonal and transcriptional status of winter and spring wheat plants during cold hardening

Project description:The effect of light during the development of freezing tolerance was studied in winter wheat (Triticum aestivum L. var. Mv Emese) and spring wheat variety Nadro. Ten-day-old plants were cold hardened at 5°C for 12 days either under normal (250 mmol m-2 s-1) or low light (20 mmol m-2 s-1) conditions.

2012-01-31 | GSE29640 | GEO

Transcriptome of Triticum aestivum genotypes associated with resistance against the Wheat dwarf virus

Project description:Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare NGS-derived Triticum aestivum transcriptome (RNA-seq) profiling methods and to evaluate genotypes associated with resistance against the Wheat dwarf virus. Methods: Triticum aestivum mRNA profiles of genotypes associated with resistance against the Wheat dwarf virus were generated by deep sequencing, in four replicates, using Illumina. The sequence reads that passed quality filters were analyzed at the transcript isoform level with two methods: Burrows–Wheeler Aligner (BWA) followed by ANOVA (ANOVA) and TopHat followed by Cufflinks. qRT–PCR validation was performed using TaqMan and SYBR Green assays. Conclusions: Our study represents the first detailed analysis of Triticum aestivum transcriptomes, with biologic replicates, generated by RNA-seq technology. The optimized data analysis workflows reported here should provide a framework for comparative investigations of expression profiles. Our results show that NGS offers a comprehensive and more accurate quantitative and qualitative evaluation of mRNA and miRNA content within a cell or tissue. We conclude that RNA-seq based transcriptome characterization would expedite genetic network analyses and permit the dissection of complex biologic functions.

2023-04-04 | GSE192518 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data