Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gene expression data for 39 inbred mice strains for neutrophils

ABSTRACT: Genome-wide expression data were generated for polymorphonuclear neutrophils (granulocytes, GN) across 39 strains in the MPD “Priority Strain Panel”.

ORGANISM(S): Mus musculus

PROVIDER: GSE60336 | GEO | 2014/12/31

SECONDARY ACCESSION(S): PRJNA258055

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Gene expression data for 39 inbred mice strains for CD4+ T cells

Project description:Genome-wide expression data were generated for CD3+CD4+CD62L+ naïve T splenocytes across 39 strains in the MPD “Priority Strain Panel”.

2014-12-31 | GSE60337 | GEO

Gene expression data for 39 inbred mice strains for neutrophils and CD4+ T cells

Project description:This SuperSeries is composed of the SubSeries listed below.

2014-12-31 | GSE60338 | GEO

Gene expression data for 39 inbred mice strains for neutrophils and CD4+ T cells

Project description:Gene expression data for 39 inbred mice strains for neutrophils and CD4+ T cells

| PRJNA258053 | ENA

CGH analysis of inbred mouses strains

Project description:The contribution to genetic diversity of genomic segmental copy number variations (CNVs) is less well understood than that of single-nucleotide polymorphisms (SNPs). While less frequent than SNPs, CNVs have greater potential to affect phenotype. In this study, we have performed the most comprehensive survey to date of CNVs in mice, analyzing the genomes of 42 Mouse Phenome Consortium priority strains. This microarray comparative genomic hybridization (CGH)-based analysis has identified 2094 putative CNVs, with an average of 10 Mb of DNA in 51 CNVs when individual mouse strains were compared to the reference strain C57BL/6J. This amount of variation results in gene content that can differ by hundreds of genes between strains. These genes include members of large families such as the major histocompatibility and pheromone receptor genes, but there are also many singleton genes including genes with expected phenotypic consequences from their deletion or amplification. Using a whole-genome association analysis, we demonstrate that complex multigenic phenotypes, such as food intake, can be associated with specific copy number changes. Keywords: comparative genomic hybridization

2007-11-06 | GSE9186 | GEO

CGH analysis of 39 Lactococcus lactis strains.

Project description:CGH analysis of 39 Lactococcus lactis strains.

| PRJNA112819 | ENA

CGH analysis of 39 Lactococcus lactis strains.

Project description:Pangenome arrays contain DNA oligomers targeting several sequenced reference genomes from the same species. In microbiology these can be employed to investigate the often high genetic variability within a species by comparative genome hybridization (CGH). The biological interpretation of pangenome CGH data depends on the ability to compare strains at a functional level, particularly by comparing the presence or absence of orthologous genes. Due to the high genetic variability, available genotype-calling algorithms can not be applied to pangenome CGH data. Therefore, we have developed the algorithm PanCGH that incorporates orthology information about genes to predict the presence or absence of orthologous genes in a query organism using CGH arrays that target the genomes of sequenced representatives of a group of microorganisms. PanCGH was tested and applied in the analysis of genetic diversity among 39 Lactococcus lactis strains from three different subspecies (lactis, cremoris, hordniae) and isolated from two different niches (dairy and plant). Clustering of these strains using the presence/absence data of gene orthologs revealed a clear separation between different subspecies and reflected the niche of the strains. Keywords: CGH, CGH analysis, orthology, Lactococcus lactis

2008-12-31 | GSE12638 | GEO

CGH analysis of 39 Lactococcus lactis strains.

2010-06-24 | E-GEOD-12638 | biostudies-arrayexpress

Leishmania donovani Ld 39 strain:Ld 39

Project description:Leishmania donovani Ld 39 strain:Ld 39 Genome sequencing and assembly

| PRJNA176885 | ENA

Bartonella quintana JK 39 strain:JK 39

Project description:Bartonella quintana JK 39 strain:JK 39 Genome sequencing and assembly

| PRJNA81675 | ENA

Mouse bone marrow derived neutrophils, LC-MSMS

Project description:Analysis of cell membrane-enriched proteins of mouse polymorphonuclear neutrophils. Further related data are present in project <a href="http://www.ebi.ac.uk/pride/archive/projects/PXD002244">PXD002244</a>.

2015-10-09 | PXD003015 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data