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Hi-C study of the E. coli MG1655 chromosome

ABSTRACT: We performed Hi-C analysis of Escherichia coli MG1655 cells in exponential and stationary growth phase. We could detect long-range interactions predominantly in the Ori domain of the chromosome. Interestingly, the use of a new type of control revealed that these interactions are mostly crosslinking independent.

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

PROVIDER: GSE61658 | GEO | 2015/09/01

SECONDARY ACCESSION(S): PRJNA261786

REPOSITORIES: GEO

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Hi-C study of the E. coli MG1655 chromosome

Project description:We performed Hi-C analysis of Escherichia coli MG1655 cells in exponential and stationary growth phase. We could detect long-range interactions predominantly in the Ori domain of the chromosome. Interestingly, the use of a new type of control revealed that these interactions are mostly crosslinking independent. 6 samples from exponential phase growth in M9 medium; 6 samples from stationary phase growth in M9 medium; for each growth condition, 3 samples were with crosslinking and 3 samples were without.

2015-09-01 | E-GEOD-61658 | biostudies-arrayexpress

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