Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Global gene expression profiling human and Chimpanzee induced pluripotent stem (iPS) cell

ABSTRACT: Gene expression study of human and Chimpanzee iPS cell.

ORGANISM(S): Homo sapiens Pan troglodytes

PROVIDER: GSE62572 | GEO | 2014/10/31

SECONDARY ACCESSION(S): PRJNA264461

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Global gene expression profiring human and Chimpanzee induced pluripotent stem (iPS) cell.

Project description:Gene expression study of human and Chimpanzee iPS cell. Affymetrix GeneChip Human Genome U133 Plus 2.0 Array were used to examine differentially expressed genes between human and chimpanzee iPS cells

2014-10-31 | E-GEOD-62572 | biostudies-arrayexpress

Global gene expression profiling human and Chimpanzee induced pluripotent stem (iPS) cell

Project description:Global gene expression profiling human and Chimpanzee induced pluripotent stem (iPS) cell

| PRJNA264461 | ENA

ChIP-seq analysis of human and chimpanzee iPS cells

Project description:ChIP-seq for H3K4me3 and H3K27me3 were conducted for iPS cells of human-1 (409-B2/HPS0076), human-2 (Nips-B2/HPS0223), chimpanzee-1 (kiku/0138F-1), and chimpanzee-2 (mari/0274F-2). The reads were mapped to the respective genomes (hg38 for human and panTro5 for chimpanzee).

2022-10-26 | GSE201295 | GEO

Transcriptome analysis of human and chimpanzee iPS cells

Project description:mRNA-seq were conducted for iPS cells of human-1 (409-B2/HPS0076), human-2 (Nips-B2/HPS0223), chimpanzee-1 (kiku/0138F-1), and chimpanzee-2 (mari/0274F-2). To compare gene expression levels, the reads were first mapped to the chimpanzee genome (panTro5), and mapped reads were then mapped to the human genome (hg38). Gene expression was anlyzed based on the hg38 annotation.

2022-10-26 | GSE201296 | GEO

TE-derived small RNA analysis of human and chimpanzee iPS cells

Project description:Small RNA-seq were conducted for iPS cells of human-1 (409-B2/HPS0076), human-2 (Nips-B2/HPS0223), chimpanzee-1 (kiku/0138F-1), and chimpanzee-2 (mari/0274F-2). The human samples were mapped to the human genome (hg38) and the chimpanzee samples were mapped to the chimpanzee genome (panTro5). The mapped reads for individual TE copies (in the repeatmasker tables downloaded from UCSC genome browser) were counted, and those for the same subfamily were summed up. The counts were normalized by RPM (reads per million genome-mapped reads).

2022-10-26 | GSE201297 | GEO

Transcriptome analysis of human and chimpanzee iPS cells

Project description:Transcriptome analysis of human and chimpanzee iPS cells

| PRJNA830828 | ENA

ChIP-seq analysis of human and chimpanzee iPS cells

Project description:ChIP-seq analysis of human and chimpanzee iPS cells

| PRJNA830829 | ENA

Human embryonic stem cell, chimpanzee induced pluripotent stem cell, orangutan induced pluripotent stem cell, rhesus embryonic stem cell, and their derived cortical organoid RNA-seq

Project description:We compared a 5 week time course of cortical organoid differentiation across human, chimpanzee, orangutan, and rhesus using bulk RNAseq. In addition, single cell RNAseq was performed on a subset of time points from human cells in weeks 0, 1, 2, and 5.

2018-05-31 | GSE106245 | GEO

Human induced pluripotent stem cell-derived hepatic stellate-like cells (iPS-HSCs) overexpressing LHX2 vs control iPS-HSCs

Project description:Transcriptional profiling of human iPS-HSCs overexpressing LHX2 compared with control iPS-HSCs, which were cocultured with human induced pluripotent stem cell-derived hepatic progenitor cells (iPS-HPCs).

2019-02-14 | GSE122750 | GEO

ChIP-seq and Transcriptome analysis of human and chimpanzee iPS cells

Project description:ChIP-seq and Transcriptome analysis of human and chimpanzee iPS cells

| PRJNA830823 | ENA