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Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure]

ABSTRACT: The goal of this study was to compare the transcriptional profile (RNA-seq) of wild type and gemin2 Arabidopsis mutants plants exposed to 10ºC for 0, 1 and 24 hours.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE63406 | GEO | 2015/08/03

SECONDARY ACCESSION(S): PRJNA267681

REPOSITORIES: GEO

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Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure]

Project description:The goal of this study was to compare the transcriptional profile (RNA-seq) of wild type and gemin2 Arabidopsis mutants plants exposed to 10ºC for 0, 1 and 24 hours. WT and gemin2 mutant plants were grown for nine days under continuous white light at 22 degrees centigrades or exposed for 1 or 24 h to 10ºC on the 9th day, before harvesting. Then the transcriptional profile of these plants was analyzed using RNA-seq.

2015-08-03 | E-GEOD-63406 | biostudies-arrayexpress

Comparative transcriptional profiling of Arabidopsis yda11 mutant and wild-type plants after infection with Plectosphaerella cucumerina

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Genome-wide analysis of gemin2 mutant transcriptome

Project description:The goal of this study was to compare the transcriptional profile (RNA-seq) of gemin2 Arabidopsis mutant with wild type plants grown under continous light conditions

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Genome-wide analysis of wild type and prmt5 mutant plants (Experiment A)

Project description:The goal of this study was to compare the transcriptional profile (RNA-seq) of wild type and prmt5 Arabidopsis mutants plants grown under continuous light at 22 degrees centigrades.

2020-04-28 | GSE149429 | GEO

Expression analysis of Arabidopsis thaliana wild-type Col-0 and selected RNA silencing mutant plants

Project description:Investigation of whole genome gene expression level changes in several Arabidopsis thaliana mutants (nrpd1, nrpe1, ros1 dml2 dml3) compared to wild-type Col-0. The mutants analyzed in this study are further described in Le et al. 'DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis' . Genome Biology (in press).

2014-08-20 | GSE60508 | GEO

Genome-wide analysis of gemin2 mutant transcriptome

Project description:The goal of this study was to compare the transcriptional profile (RNA-seq) of gemin2 Arabidopsis mutant with wild type plants grown under continuous light conditions WT and gemin2 mutant plants were grown for nine days under continuous white light at 22 degrees centigrades and the transcriptional profile of these plants was analyzed using RNA-seq.

2015-08-03 | E-GEOD-63405 | biostudies-arrayexpress

Genome-wide analysis of wild type and prmt5 mutant plants (Experiment B)

Project description:The goal of this study was to compare the transcriptional profile (RNA-seq) of wild type and prmt5 Arabidopsis mutants plants grown under continuous white light at 22 degrees centigrades for 9 days

2020-04-28 | GSE149430 | GEO

Arabidopsis thaliana: transgenic plants vs wild type

Project description:Transcriptional profiling of Arabidopsis thaliana 12-days old seedlings comparing Col-0 wild type with transgenic plants with altered expression of dual-targetting plastid/mitochondrial organellar RNA-polymerase RPOTmp. Transgenic plants used for experiment were: overexpressor plants obtained by transformation of Col-0 WT plants with genetic constructs created in [Tarasenko et al., 2016] contained catalytic part of RPOTmp enzyme with transit peptides of RPOTm (mitochondrial) and RPOTp (plastid) by agrobacterial transformation; plants with complementation of RPOTmp functions in mitochondria or chloroplasts obtained from transformation of GABI_286E07 rpotmp knockout-mutant plants with genetic constructs created in [Tarasenko et al., 2016]. Goal was to determine the effects of RPOTmp knockout/overexpression on global Arabidopsis thaliana gene expression.

2023-12-25 | GSE251661 | GEO

Quantification of poly-ubiquitinated proteins in wild type Arabidopsis and amiNAA10 plants

Project description:Wild type Arabidopsis Col-0 plants and mutants depleted of the catalytic subunit of the ribosome-associated N-acetyltransferase A (NatA) complex (amiNAA10) were grown on soil for six weeks under short-day conditions (8h light, light intensity: 100 µE, 21 °C/18 °C temperature (day/night), 50 % humidity). Proteasome and deubiquitinase activity were inhibited at 10 am (2 h of light) by floating leaf discs on ½ Hoagland supplemented with 50 µM MG132 and 20 µM PR-619 for 5 h.

2022-04-04 | PXD024329 | Pride

Quantification of the translatome in wild type Arabidopsis and amiNAA10 plants

Project description:Wild type Arabidopsis Col-0 plants and mutants depleted of the catalytic subunit of the ribosome-associated N-acetyltransferase A (NatA) complex (amiNAA10) were grown on soil for six weeks under short-day conditions (8h light, light intensity: 100 µE, 21 °C/18 °C temperature (day/night), 50 % humidity). The translatome of both genotypes after 2 hours of light (10 am) was determined by feeding of the trackable Met-analogue azidohomoalanine for 4 hours to leaf disks floated on ½ Hoagland medium containing 50 µM azidohomoalanine in the light.

2022-04-04 | PXD024328 | Pride

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