Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome comparison of ectomycorrhizal, ericoid and orchid mycorrhizal fungi

ABSTRACT: This SuperSeries is composed of the SubSeries listed below.

ORGANISM(S): Suillus luteus Oidiodendron maius Piloderma croceum Serendipita vermifera Tulasnella calospora Amanita muscaria Paxillus involutus Hebeloma cylindrosporum

PROVIDER: GSE63947 | GEO | 2015/02/06

SECONDARY ACCESSION(S): PRJNA269583

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcriptome comparison of ectomycorrhizal, ericoid and orchid mycorrhizal fungi

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2015-02-06 | E-GEOD-63947 | biostudies-arrayexpress

Transcriptome comparison of ectomycorrhizal, ericoid and orchid mycorrhizal fungi

Project description:Transcriptome comparison of ectomycorrhizal, ericoid and orchid mycorrhizal fungi

| PRJNA269583 | ENA

Arbuscular mycorrhizal symbioses

Project description:This SuperSeries is composed of the SubSeries listed below.

2007-03-08 | GSE5477 | GEO

The molecular components of the extracellular protein-degradation pathways of the ectomycorrhizal fungus Paxillus involutus

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2013-09-01 | E-GEOD-47840 | biostudies-arrayexpress

Diversity of Mycorrhizal Fungi in Temperate Orchid Species: Comparison of Culture-Dependent and Culture-Independent Methods.

Project description:Many orchid species are endangered due to anthropogenic pressures such as habitat destruction and overharvesting, meanwhile, all orchids rely on orchid mycorrhizal fungi (OMF) for seed germination and seedling growth. Therefore, a better understanding of this intimate association is crucial for orchid conservation. Isolation and identification of OMF remain challenging as many fungi are unculturable. In our study, we tested the efficiency of both culture-dependent and culture-independent methods to describe OMF diversity in multiple temperate orchids and assessed any phylogenetic patterns in cultivability. The culture-dependent method involved the cultivation and identification of single pelotons (intracellular hyphal coils), while the culture-independent method used next-generation sequencing (NGS) to identify root-associated fungal communities. We found that most orchid species were associated with multiple fungi, and the orchid host had a greater impact than locality on the variability in fungal communities. The culture-independent method revealed greater fungal diversity than the culture-dependent one, but despite the lower detection, the isolated fungal strains were the most abundant OMF in adult roots. Additionally, the abundance of NGS reads of cultured OTUs was correlated with the extent of mycorrhizal root colonization in orchid plants. Finally, this limited-scale study tentatively suggests that the cultivability character of OMF may be randomly distributed along the phylogenetic trees of the rhizoctonian families.

| S-EPMC10890429 | biostudies-literature

ene expression patterns of wood decay fungi Postia placenta and Phanerochaete chrysosporium are influenced by wood substrate composition during degradation

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2015-05-19 | E-GEOD-69012 | biostudies-arrayexpress

Oxidized 5mC modifications in fungi

Project description:This SuperSeries is composed of the SubSeries listed below.

2022-01-13 | GSE185551 | GEO

Interlab microarray comparison

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2016-05-31 | E-GEOD-81544 | biostudies-arrayexpress

Comparison of microRNA Profiling Platforms

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series