Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Differential expression of Rice genes upon Rhodotorula treatment

ABSTRACT: The experiments were performed to understand the molecular basis of plant growth promotion in rice by Rhodotorula mucilaginosa JGTA-S1, an endophytic yeast from Typha angustifolia

ORGANISM(S): Oryza sativa

PROVIDER: GSE64321 | GEO | 2014/12/18

SECONDARY ACCESSION(S): PRJNA270745

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Differential expression of rice root genes upon Rhodotorula treatment

2019-11-24 | GSE99075 | GEO

Differential expression of Rice genes upon Rhodotorula treatment

Project description:The experiments were performed to understand the molecular basis of plant growth promotion in rice by Rhodotorula mucilaginosa JGTA-S1, an endophytic yeast from Typha angustifolia Three week old rice plant grown in untreated condition were supplemented with Rhodototorula cell suspension. Shoots were harvested 0hr, 6hrs or 24hrs post treatment. Total RNA isolated from those shoot tissue & used for Microarray. 0 hr treated sample considered here as Control

2014-12-18 | E-GEOD-64321 | biostudies-arrayexpress

Transcriptome Sequencing of Rhodotorula mucilaginosa

Project description:Changes of induced expression level of related genes in the degradation of patulin by Rhodotorula mucilaginosm

2019-12-11 | GSE141796 | GEO

Transcriptome change in response to patulin stress in Rhodotorula mucilaginosa

Project description:The yeast Rhodotorula mucilaginosa shown the capability to degrade patulin by the intracellular enzymes. However, the enzymes which risponsible for the degradation process was unkonown. Transcriptome change in response to mycotoxin patulin was analyzed. The molecular mechanism of Rhodotorula mucilaginosa withstand patulin was revealed.

2018-12-01 | GSE98937 | GEO

Rhodotorula mucilaginosa JGTA-S1

Project description:Endosymbiotic bacterial population of Rhodotorula mucilaginosa JGTA-S1

| PRJNA861122 | ENA

Rice endophytic metagenome

Project description:Rice endophytic Metagenome

| PRJNA482102 | ENA

rice endophytic metagenome 2

Project description:rice endophytic metagenome 2 Metagenome

| PRJNA482103 | ENA

Rhodotorula

Project description:Rhodotorula sp. overview

| PRJNA412948 | ENA

Expression data from shoots of rice seedlings after inoculation by Sinorhizobium meliloti 1021

Project description:Comparative transcriptome was profiled of rice seedling shoots in responding to live S. meliloti1021(LS) and dead S. meliloti1021 (DS) inoculation. The shoots with LS and DS were collected at 1, 2, 5 and 8 DAI respectively for microarry analysis. A total of 2413 differentially expressed genes (DEGs) were detected (q ≤ 0.05 and 1.5-fold change used as a cutoff), showing significantly differences between LS and DS. Enriched gene ontology terms and pathways analysis indicated that functions of these DEGs were observably involved in biotic stress, cellular regulation, plant hormone transduction, cell cycle and cell division. Among the classes of transcription factors, some key regulatory gene families such as WRKYs, NAC, bZIP, MYB and ZIM were involved in responding to defense. Others such as AUX, E2F/DP, BES1 and GASR were growth related. We used microarrays to profile the global view of gene expression underlying S. meliloti 1021 inoculation and identified regulated plant genes and pathway that likely key events in endophytic colonization and molecular promotion mechanism.

2016-09-01 | GSE53535 | GEO

TMT proteomic analysis the interaction mode of endophytic actinobacteria and host rice in against rice blast disease

Project description:Under disease stress, activation of defense response in plants often comes with the cost of a reduction in growth and yield, which is referred as the growth-defense trade-off. The microorganisms which can be recruited by plants to mitigate the growth-defense trade-off are of great value in crop breeding. The proteomic, physiological and transcriptional profiling data offer insights into the molecular basis underlying the balancing between defense and growth in endophyte-rice symbiont. The findings provide an example for the endophyte-mediated modulation of growth-defense trade-offs in plants and indicated the promising application of endophytic actinobacterial strains in agriculture to breed “microbe-optimized crops”.

2022-02-17 | PXD026348 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data