Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Liver transcriptome analysis of the large yellow croaker under fasting or temperature treatment by RNA-seq

ABSTRACT: We sequenced mRNA from 4 liver samples of the large yellow croaker (Larimichthys crocea) taken from thermal stress treatment fish, normal temperature treatment fish, cold stress treatment fish and fasting stress treatment fish, respectively, to investigate the transcriptome and comparative expression profiles of the large yellow croaker liver undergoing thermal stress, cold stress and fasting.

ORGANISM(S): Larimichthys crocea

PROVIDER: GSE67756 | GEO | 2015/08/06

SECONDARY ACCESSION(S): PRJNA280841

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Liver transcriptome analysis of the large yellow croaker under fasting or temperature treatment by RNA-seq

Project description:We sequenced mRNA from 4 liver samples of the large yellow croaker (Larimichthys crocea) taken from thermal stress treatment fish, normal temperature treatment fish, cold stress treatment fish and fasting stress treatment fish, respectively, to investigate the transcriptome and comparative expression profiles of the large yellow croaker liver undergoing thermal stress, cold stress and fasting. Liver mRNA profiles of control group (LB2A), thermal stress group (LC2A), cold stress group (LA2A) and 21-day fasting group (LF1A) were generated by RNA-seq, using Illumina HiSeq 2000.

2015-08-06 | E-GEOD-67756 | biostudies-arrayexpress

Muscle transcriptome analysis of the large yellow croaker under fasting treatment by RNA-seq

Project description:We sequenced mRNA from 2 muscle samples of the large yellow croaker (Larimichthys crocea) taken from normal feeding fish and fasting stress treatment fish, respectively, to investigate the transcriptome and comparative expression profiles of the large yellow croaker muscle undergoing fasting.

2015-09-22 | GSE73291 | GEO

Muscle transcriptome analysis of the large yellow croaker under fasting treatment by RNA-seq

2015-09-22 | E-GEOD-73291 | biostudies-arrayexpress

Large yellow croaker skin mucus proteome

Project description:Proteomics data demonstrate that skin mucus of the air-exposed large yellow croaker had a complex composition, with an unexpectedly high number of proteins (3,209), suggesting its multiple protective mechanisms possibly involved in antioxidant functions, oxygen transport, immune defence, and osmotic and ionic regulation. These results expand our knowledge of skin mucus secretion and function in fish, highlighting its importance in response to stress.

2015-04-17 | PXD001218 | Pride

lncRNAs expression in the liver of large yellow croaker fed with fish oil, soybean oil, olive oil, and palm oil diets

Project description:To investigate the role of lncRNAs on lipid metabolism, we did RNAseq to find the difference among large yellow croaker fed with fish oil (FO), soybean oil (SO), olive oil (OO), and palm oil (PO) diets

2022-07-05 | GSE186012 | GEO

proteome in liver of large yellow croaker under high temperature stress

Project description:In order to explore the changes in protein expression of large yellow croaker Larimichthys crocea under high temperature stress, isobaric tags for relative and absolute quantitation (iTRAQ) combined with liquid chromatography-tandem mass spectrometry (LC-MS/MS) was used to perform proteome analysis on the liver between thermal-tolerant and thermal-sensitive groups of large yellow croaker.

2022-10-26 | PXD037716 |

Induced differentiation of large yellow croaker muscle satellite cells

Project description:Traditional differentiation of myoblasts is usually induced by serum starvation method, in which 2%HS is used to induce myoblasts to differentiate into myotubes. But, traditional serum starvation method is difficult to differentiate large yellow croaker muscle satellite cells efficiently. Although myotubes were induced within 2-3 days with medium containing 2% horse serum (HS), they detached shortly and died soon after. To improve differentiation efficiency and survival rate, different combinations of basal medium, serum ratios and myogenic factors were evaluated. Finally, the F12 medium containing 8% HS, 10 ng/ml IGF-1, 50 nM necrosulfonamide and 200 μM ascorbic acid was identified as an effective recipe for myogenic differentiation. On day 3 of culture in this differentiation medium, elongated myotubes began to appear, and on day 6, striations similar to skeletal muscle were observed in some of myotubes. But it is still inefficient, the fusion index (the proportion of nuclei in multinucleated myotubes) was 6.39% on day 3 and 1.30% on day 6 (1.30%) .Therefore, we need to find a more efficient method to induce myogenic differentiation. We then performed gene expression profiling analysis using data obtained from RNA-seq of Large yellow croaker muscle satellite cells during differentiation at three time points(day0,day3,day6).

2023-08-08 | GSE212904 | GEO

Large yellow croaker iridovirus

Project description:Large yellow croaker iridovirus Genome sequencing

| PRJNA786415 | ENA

Brain transcriptome of Larimichthys crocea (Large yellow croaker) under hypoxia

Project description:Brain transcriptome at 0h, 1h, 3h, 6h, 12h, 24h, 48h after hypoxia stress Large yellow croakers (body weight at 90-100 g) were purchased from the mariculture farm in Ningde, Fuzhou, China. The fish were maintained at 25 °C in aerated water tanks (dissolved oxygen concentration: 7.8±0.5 mg per liter) with a flow through seawater supply. After 7 days of acclimation, these fish were used for the following experiments. Hypoxic time-course experiments were conducted at 25 °C using published method 30, by bubbling nitrogen gas into an aquarium. The desired pO2 was controlled by using dissolved oxygen meter (, Canada). At the onset of the time course, the oxygen content of the tank was lowered from an aerated pO2 of 100% (7.8 mg per liter) down to 20% (1.6±0.2 mg per liter) over a 30-min period. At the 1-, 3-, 6-, 12-, 24-, and 48-h time points, fish were sampled and sequenced.

2015-04-17 | E-GEOD-57608 | biostudies-arrayexpress

HiSeq of small RNA in muscle of large yellow croaker

Project description:We obtained the credible target sequences by filtrating high-throughput profiling of muscle tissue in large yellow croaker.The goal of this study is to measured almost all small RNA in muscle not only at the common feeding but also during the fasting period. We set the data of microRNA as a mainspring of study. By bioinformatics analysis, all possible target binding site were compared and predicted in both known and unknown.

2018-04-26 | GSE113656 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data