Gene expression data following heptose-bisphosphate (HBP) treatment of Jurkat T cells
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ABSTRACT:
ORGANISM(S): Homo sapiens
PROVIDER: GSE67840 | GEO | 2015/04/15
SECONDARY ACCESSION(S): PRJNA281055
REPOSITORIES: GEO
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Project description:Host recognition of pathogen-associated molecular patterns (PAMPs) initiates an innate immune response that is critical for pathogen elimination and engagement of adaptive immunity. Here we show that mammalian cells can detect and respond to the bacterial-derived monosaccharide heptose-1,7-bisphosphate (HBP). A metabolic intermediate in lipopolysaccharide (LPS) biosynthesis, HBP is highly conserved in Gram-negative bacteria, yet absent from eukaryotic cells. Detection of HBP within the host cytosol activated the NF-?B pathway in vitro, and induced innate and adaptive immune responses in vivo. Moreover, we used a genome-wide RNAi screen to uncover an innate immune signaling axis, mediated by phosphorylation-dependent oligomerization of the TRAF-interacting protein with forkhead-associated domain (TIFA) that is triggered by HBP. Thus, HBP is a PAMP that activates TIFA-dependent immunity to Gram-negative bacteria. We used a microarray to characterize the gene expression signature induced by HBP. We treated two clonal Jurkat T cell lines with culture supernatants prepared from N. gonorrhoeae, a HBP shedding Gram-negative bacteria, or M. catarrhalis, a naturally HBP deficient Gram-negative bacteria. Genes upregulated by N. gonorrhoeae supernatants compared to M. catarrhalis supernatants were considered induced by HBP
2015-04-15 | E-GEOD-67840 | biostudies-arrayexpress
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2011-12-31 | GSE31394 | GEO
Project description:In order to understand the appropriate use of potentially beneficial Gram positive microbes through their introduction in the gut microbiome, it is necessary to understand the influence of individual bacteria on the host response system at a cellular level. In the present study we showed that lipopolysaccharide (LPS), flagellated Gram negative bacteria, potentially beneficial Gram positive bacteria and yeast interact differently with human intestinal enterocytes (IEC) with a custom-designed expression microarray evaluating 17 specific host-response pathways. Only, LPS and flagellated Gram negative bacteria induced inflammatory response, while a subset of Gram positive microbes had anti-inflammatory potential. The main outcome from the study was the differential regulation of the central MAPK signaling pathway by these Gram positive microbes versus commensal/pathogenic Gram negative bacteria. The microarray was efficient to highlight the impact of individual bacteria on IEC response, but q-RT-PCR validation demonstrated some underestimation for down regulated genes by the microarray. This Immune Array will allow us to better understand the mechanisms underlying pathogen-induced host immune responses, aid in the selection potentially probiotic microbes and perhaps select biomarkers for future clinical studies. In this study, human immune response was assessed by stimulating HT-29 intestinal epithelial cells (IEC) with different microorganisms (or LPS) individually. For each of the 12 different treatments, between 4 and 8 biological replicates were performed, analyzed with dye-swaps and hybridized against control or untreated cells. Genes that were showing a 1.3 mRNA transcript abundance fold change and a P-value below 0.05 were considered to be differentially expressed.
2011-12-31 | E-GEOD-31394 | biostudies-arrayexpress
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2011-10-31 | E-GEOD-33274 | biostudies-arrayexpress
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