Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription factor trapping by RNA in gene regulatory elements

ABSTRACT: This SuperSeries is composed of the SubSeries listed below.

ORGANISM(S): Mus musculus

PROVIDER: GSE68198 | GEO | 2015/10/29

SECONDARY ACCESSION(S): PRJNA282023

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcription factor trapping by RNA in gene regulatory elements

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2015-10-29 | E-GEOD-68198 | biostudies-arrayexpress

BRG1 recruitment by transcription factors MITF and SOX10 defines a specific configuration of regulatory elements in the melanocyte lineage

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2015-04-02 | E-GEOD-61967 | biostudies-arrayexpress

Transcription factor occupancy is linked to DNA methylation turnover at active regulatory regions

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2013-12-24 | E-GEOD-39739 | biostudies-arrayexpress

Systematic identification of 3'UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2014-03-12 | E-GEOD-55781 | biostudies-arrayexpress

Genome-wide discovery of daily transcriptome, cis-regulatory elements and transcription factor footprints in the monarch butterfly brain

Project description:This SuperSeries is composed of the SubSeries listed below.

2019-07-02 | GSE122447 | GEO

Enhancer transcription identifies cis-regulatory elements for photoreceptor cell types

Project description:This SuperSeries is composed of the SubSeries listed below.

2020-01-08 | GSE136565 | GEO

Dynamic Activity in cis-Regulatory Elements of Leukocytes Identifies Transcription Factor Activation and Stratifies COVID-19 Severity in ICU Patients

Project description:This SuperSeries is composed of the SubSeries listed below.

2023-03-02 | GSE221067 | GEO

Genome wide targeting of the epigenetic regulatory protein CTCF to gene promoters by the transcription factor TFII-I

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2014-08-29 | E-GEOD-60918 | biostudies-arrayexpress

Transcription factor trapping by RNA in gene regulatory elements.

Project description:Transcription factors (TFs) bind specific sequences in promoter-proximal and -distal DNA elements to regulate gene transcription. RNA is transcribed from both of these DNA elements, and some DNA binding TFs bind RNA. Hence, RNA transcribed from regulatory elements may contribute to stable TF occupancy at these sites. We show that the ubiquitously expressed TF Yin-Yang 1 (YY1) binds to both gene regulatory elements and their associated RNA species across the entire genome. Reduced transcription of regulatory elements diminishes YY1 occupancy, whereas artificial tethering of RNA enhances YY1 occupancy at these elements. We propose that RNA makes a modest but important contribution to the maintenance of certain TFs at gene regulatory elements and suggest that transcription of regulatory elements produces a positive-feedback loop that contributes to the stability of gene expression programs.

| S-EPMC4720525 | biostudies-literature

A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2013-11-08 | E-GEOD-52181 | biostudies-arrayexpress