Transcriptomics

Dataset Information

0

Using RNA Seq to define the regulon of the Pseudomonas aeruginosa transcription factor Anr in low-oxygen colony biofilms.


ABSTRACT: Purpose : The goal of this study was to use RNA Seq to define the regulon of the transciption factor Anr by comparing global transcriptional profiles of Pseudomonas aeruginosa strain PAO1 and a clinical isolate with their isogenic ∆anr mutants, grown in colony biofilms at 1% oxygen. Methods : mRNA profiles were generated for laboratory strain PAO1 and for a clinical isolate J215, as well as for ∆anr derivatives of each strain, in duplicate, by deep sequencing. Strains were grown for 12 hours in colony biofilms at 1% O2, 5% CO2 prior to RNA harvest. Ribosomal and transfer RNAs were removed using the MICROBExpress kit (Life Technologies). mRNA reads were trimmed and mapped to the PAO1 NC_002516 reference genome from NCBI using the ClC Genomics Workbench platform and defaut parameters.

ORGANISM(S): Pseudomonas aeruginosa Pseudomonas aeruginosa PAO1

PROVIDER: GSE68534 | GEO | 2015/06/29

SECONDARY ACCESSION(S): PRJNA283002

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2015-06-29 | E-GEOD-68534 | biostudies-arrayexpress
2015-11-15 | GSE67006 | GEO
2010-07-07 | E-GEOD-17179 | biostudies-arrayexpress
2009-07-31 | GSE17296 | GEO
2009-08-09 | E-GEOD-17296 | biostudies-arrayexpress
2010-06-22 | GSE17179 | GEO
2012-05-02 | E-GEOD-34762 | biostudies-arrayexpress
| PRJNA524893 | ENA
| PRJNA524793 | ENA
| PRJNA283002 | ENA