Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gene expression profile of rice shoot in response to macronutrient excess conditions

ABSTRACT: Macronutrients are pivotal elements for proper plant growth and development. We performed microarray analysis of rice shoot under nitrogen (N), phosphorus (P), and potassium (K) excess to obtain a global view of gene regulations associated with plant response to essential nutrients.

ORGANISM(S): Oryza sativa Oryza sativa Japonica Group

PROVIDER: GSE73768 | GEO | 2019/10/06

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Gene expression profile of rice shoot in response to macronutrient deficiency

2015-08-12 | GSE66935 | GEO

Gene expression profile of rice shoot in response to macronutrient deficiency

Project description:Macronutrients are pivotal elements for proper plant growth and development. We performed microarray analysis of rice shoot under nitrogen (N), phosphorus (P), and potassium (K) deficiency conditions to obtain a global view of gene regulations associated with plant response to essential nutrients. We performed microarray analysis of rice shoot under N, P and K deficiency conditions (1/4, 1/16 and 1/64 of normal concentration) and control for each nutrient. We collected a total of 36 microarray data corresponding to 12 samples with 3 replicates.

2015-08-12 | E-GEOD-66935 | biostudies-arrayexpress

Gene expression profile of rice root in response to macronutrient deficiency

Project description:Macronutrients are pivotal elements for proper plant growth and development. We performed microarray analysis of rice root under nitrogen (N), phosphorus (P), and potassium (K) deficiency conditions to obtain a global view of gene regulations associated with plant response to essential nutrients.

2019-10-06 | GSE73767 | GEO

Gene expression profile of leaf in rice grown under paddy field with macronutrient deficiencies

Project description:Macronutrients are pivotal elements for proper plant growth and development. We performed microarray analysis of rice leaves under nitrogen (N), phosphorus (P), and potassium (K) deficiency conditions in paddy field to obtain a global view of gene regulations associated with plant response to essential nutrients.

2019-10-06 | GSE73766 | GEO

Gene expression profile of rice shoot and root in response to nitrogen deficiency treatment under phosphorus deficiency condition.

Project description:Nitrogen (N) and phosphorus (P) are pivotal element for proper plant growth and development. We performed microarray analysis of rice shoot and root after nitrogen deficiency (-N) treatment under phosphorus deficiency (-P) condition to obtain a global view of gene regulations associated with plant response to -N under -P condition.

2019-10-06 | GSE73775 | GEO

Gene expression profile of rice shoot in response to nitrogen deficiency condition

Project description:Nitrogen (N) are pivotal element for proper plant growth and development. We performed microarray analysis of rice shoot under nitrogen deficiency (-N) to obtain a global view of gene regulations associated with plant response to -N.

2019-10-06 | GSE73772 | GEO

Gene expression profile of rice root in response to phosphorus deficiency condition

Project description:Phosphorus (P) are pivotal element for proper plant growth and development. We performed microarray analysis of rice root under phosphorus deficiency (-P) to obtain a global view of gene regulations associated with plant response to -P.

2019-10-06 | GSE73773 | GEO

Expression data of soybean accessions under different phosphorus treatments

Project description:Phosphorus is one of the most important macronutrients that is required for plant growth and development. However, stress under low-P conditions has become a limiting factor that affects crop yields and qualities. Plants have developed strategies to cope with this, while few genes associated with low-P tolerance have been identified in soybean. We used microarrays to detail the global programme of gene expression under different phosphorus treatments of two soybean accessions CD and YH with different phosphorus efficiency.

2016-03-08 | GSE78242 | GEO

Phosphoproteomic profiling responds to phosphate starvation in rice

Project description:Phosphorus is one of the most important macronutrients required for plant growth and development. The importance of phosphorylation modification in regulating phosphate (Pi) homeostasis in plants is emerging. We performed phosphoproteomic profiling to characterize proteins whose degree of phosphorylation is altered in response to Pi starvation in rice root.

2021-01-13 | PXD012764 | Pride

Predicting species-resolved macronutrient acquisition during succession in a model phototrophic biofilm using an integrated 'omics approach

Project description:The principles governing acquisition and interspecies exchange of nutrients in microbial communities and how those exchanges impact community productivity are poorly understood. Here, we examine energy and macronutrient acquisition in unicyanobacterial consortia for which species-resolved genome information exists for all members, allowing us to use multi-omic approaches to predict species’ abilities to acquire resources and examine expression of resource-acquisition genes during succession. Metabolic reconstruction indicated that a majority of heterotrophic community members lacked the genes required to directly acquire the inorganic nutrients provided in culture medium, suggesting high metabolic interdependency. The sole primary producer in consortium UCC-O, cyanobacterium Phormidium sp. OSCR, displayed declining expression of energy harvest, carbon fixation, and nitrate and sulfate reduction proteins but sharply increasing phosphate transporter expression over 28 days. Most heterotrophic members likewise exhibited signs of phosphorus starvation during succession. Though similar in their responses to phosphorus limitation, heterotrophs displayed species-specific expression of nitrogen acquisition genes. These results suggest niche partitioning around nitrogen sources may structure the community when organisms directly compete for limited phosphate. Such niche complementarity around nitrogen sources may increase community diversity and productivity in phosphate-limited phototrophic communities.

2017-05-24 | GSE99220 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data