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3D chromosomal capture of X. laevis

ABSTRACT: To determine 3D chromosomal structure in differentating ectoderm of the frog Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: 22198700) on wild-type dissected ectoderm and ectoderm injected with multicilin. We used these data to investigate possible differences between these conditions (we found very few) and also to determine the positions of topologically-associated domains (TADs). These data were also used to facilitate chromosome-level assembly of the X. laevis genome.

ORGANISM(S): Xenopus laevis

PROVIDER: GSE76363 | GEO | 2015/12/29

SECONDARY ACCESSION(S): PRJNA307102

REPOSITORIES: GEO

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