Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis [BS-seq]

ABSTRACT: We report the methylome analysis of Arabidopsis plants deficient for the expression of 2 factors involved in global genome repair using whole genome bisulfite sequencing technology

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE76648 | GEO | 2016/08/17

SECONDARY ACCESSION(S): PRJNA308231

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis [small RNA-seq]

Project description:We report the small RNA analysis of Arabidopsis plants deficient for the expression DDB2 involved in global genome repair using small RNA sequencing. In addition we performed RNA immunoprecipitation (RIP) of DDB2.

2016-08-17 | GSE76649 | GEO

Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis

Project description:This SuperSeries is composed of the SubSeries listed below.

2016-08-17 | GSE76651 | GEO

Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis

Project description:Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis

| PRJNA308230 | ENA

BS-seq of ros1-3, ros1-4 with wildtype col-0

Project description:To servey the methylome changes by mutation of a DNA demethylase ROS1, we performed the Next-gen sequencing (NGS) associated whole genome bisulfite sequencing (BS-seq) analysis. Two ROS1 knockout lines (ros1-3 and ros1-4; Penterman et al. 2007 [PMID: 17409185]) were subjected in this study.

2018-12-31 | GSE64569 | GEO

RNA-Seq and BS-Seq of Sorghum bicolor tissues

Project description:This study utilized next generation sequencing technology (RNA-Seq and BS-Seq) to examine the transcriptome and methylome of various tissues within sorghum plants with the ultimate goal of improving the Sorghum bicolor annotation We examined the mRNA of various Sorghum bicolor (BTx623) tissues (flowers, vegitative and floral meristems, embryos, roots and shoots) and bisulfite treated DNA from two root samples

2014-08-29 | E-GEOD-50464 | biostudies-arrayexpress

Genome-wide profiling of the functional DNA methylation landscape at base-pair resolution in human cancer types [BS-seq]

Project description:Whole genome bisulphite sequencing of 13 human cancer samples and 9 normal controls. The main goal is to find the Diffrenetial methylated regions (DMR) at Genome wide level in different tissues and cancer types Sequencing of bisulfite converted DNA human cancer samples and normal control tissue types.

2016-01-08 | E-GEOD-52271 | biostudies-arrayexpress

DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A [BS-Seq]

Project description:Here, we demonstrate that dCas9-SunTag-DNMT3A dramatically increased CpG methylation at the HOXA5 locus in human embryonic kidney 293T cells (HEK293T). Furthermore, using a single sgRNA, dCas9-SunTag-DNMT3A was able to methylate a 4.5 kb genomic region and repress HOXA5 gene expression. Reduced representation bisulfite sequencing (RRBS) and RNA-seq showed that dCas9-SunTag-DNMT3A methylated regions of interest with minimal impact on the global DNA methylome and transcriptome.

2017-08-22 | GSE97812 | GEO

BS-seq of Tet-TKD 2-cell embryos

Project description:whole genome bisulfite sequencing of single control and Tet-TKD 2-cell embryos

2021-11-22 | GSE156006 | GEO

Landscape-scale terrestrial factors are also vital in shaping Odonata assemblages of watercourses.

Project description:Habitat loss and fragmentation causes a decline in insect populations. Odonata (both dragonflies and damselflies) are especially threatened by the destruction of both aquatic and terrestrial environment. Moreover, effects of large-scale habitat heterogeneity on Odonata assemblages are poorly studied. In a two years study along East-European lowland watercourses both aquatic and terrestrial environment were studied to reveal the importance of local (e.g. water depth, macrovegetation cover, etc.) and landscape-scale (e.g. farmland patch size, forest patch proportion, etc.) variables to Odonata (as well as to dragonflies and damselflies separately) through increasing spatial sampling scales. The specimens were sampled using 500?m long transects from May to September. Results, both on local and landscape scales emphasized the importance of terrestrial environment on Odonata. Local variables influence damselflies, while dragonflies are more sensitive to landscape variables. Damselfly's diversity decreased with increasing macrovegetation cover, while dragonfly's diversity decreased with the increasing degree of land use intensification, but increased with the length of watercourses. It is thus vital to stress the importance of partial watercourse clearing, and moderate maintenance of traditional farm management based on small parcel farming near watercourses to maintain diverse and healthy Odonata assemblages.

| S-EPMC6890666 | biostudies-literature

An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis [BS-seq]

Project description:Illumina-based whole genome bisulfite sequencing libraries for 4 RNA-directed DNA methylation mutants

2012-05-26 | GSE36143 | GEO