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Characterization of genetic variability of Venezuelan equine encephalitis viruses

ABSTRACT: We performed whole genome single nucleotide polymorphism (SNP) based analysis of all available Venezuelan equine encephalitis (VEE) virus antigenic complex genomes and developed a high resolution genome-wide SNP microarray. We used the SNP microarray to analyze a broad panel of VEEV isolates, found excellent concordance between array and sequence based genotypes for previously sequenced strains, and genotyped unsequenced strains.

ORGANISM(S): Cabassou virus Pixuna virus Venezuelan equine encephalitis virus Mucambo virus

PROVIDER: GSE79530 | GEO | 2016/03/24

SECONDARY ACCESSION(S): PRJNA316099

REPOSITORIES: GEO

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