Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MRNA sequencing of WT and cdk3∆ cells in conjugation 1, 2 and 3 (C1, C2 and C3) hours of Tetrahymena thermophila.

ABSTRACT: The goals of this study is to investigate the function of Cdk3 of Tetrahymena thermophila.

ORGANISM(S): Tetrahymena thermophila

PROVIDER: GSE80977 | GEO | 2017/08/15

SECONDARY ACCESSION(S): PRJNA320218

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

mRNA sequencing of WT and e2fl-1∆ cells in conjugation 2, 3, 4, 5, 6 and 7 (C2, C3, C4, C5, C6 and C7) hours of Tetrahymena thermophila

Project description:The goals of this study is to investigate the function of E2fl-1 of Tetrahymena thermophila.

2017-08-15 | GSE81856 | GEO

mRNA sequencing of WT, ∆EZL1 and ∆DCL1 cells in conjugation 3, 6 and 10 (C3, C6 anc C10) hours of Tetrahymena thermophila

Project description:The goals of this study to find the locus which induced in EZL1KO and DCL1KO cells, especially in the non-MDS regions of the MIC genome of Tetrahymena thermophila.

2016-12-31 | GSE64046 | GEO

mRNA sequencing of WT and dpl2∆ cells in conjugation 3, 4, 5, 6 and 7 (C3, C4, C5, C6 and C7) hours of Tetrahymena thermophila

Project description:The goals of this study are to investigate the function of Dpl2 of Tetrahymena thermophila.

2018-05-31 | GSE104524 | GEO

mRNA sequencing of WT and cyc17∆ cells in conjugation 4, 5, 6 and 7 (C4, C5, C6 anc C7) hours of Tetrahymena thermophila

Project description:The goals of this study is to investigate the function of Cyc17 of Tetrahymena thermophila.

2017-08-15 | GSE77585 | GEO

Genome-Wide gene expression of Tetrahymena thermophila conjugation

Project description:Eleven genome wide microarrays containing the predicted coding sequences (putative genes) for the ciliated protozoan Tetrahymena thermophila used to study gene expression in conjugation cells (C-0, C-15m, C-2, C-4, C-6, C-8, C-10, C-12, C-14, C-16, C-18). Combined these eleven microarrays with 50 microarrays described in Miao et al (2009) and other 6 microarrays, we constructed the Tetrahymena gene network (TGN) using three methods: the Pearson correlation coefficient, the Spearman correlation coefficient and the context likelihood of relatedness (CLR) algorithm. The accuracy and coverage of the three networks were evaluated using four conserved protein complexes in yeast, and the CLR network was found to be the best network, with a Z-score threshold 3.49. Then the TGN was partitioned, and 55 modules were found. In addition, analysis for the arbitrarily determined 1200 hubs showed that these hubs could be sorted into six groups according to expression profiles. We also investigated human disease orthologs in Tetrahymena that are missing in yeast and found evidence indicating that some of these were involved in the same process in Tetrahymena as in human.

2011-06-13 | GSE26650 | GEO

Genome-Wide gene expression of Tetrahymena thermophila conjugation

2011-06-13 | E-GEOD-26650 | biostudies-arrayexpress

Tetrahymena thermophila

Project description:Tetrahymena thermophila

| PRJNA11958 | ENA

mRNA sequencing of WT, ∆MTA and ∆MTB cells in Starvation, costimulation and early Conjugation of Tetrahymena thermophila.

Project description:The goals of this study is to investigate the function of MTA and MTB of Tetrahymena thermophila.

2022-02-02 | GSE143928 | GEO

RNA-seq analysis of Tetrahymena thermophila

Project description:We present a comprehensive transcriptome of ciliate T. thermophila using the Illumina RNA-seq platform. The data was generated from the six mRNA samples of growth, starvation and conjugation of Tetrahymena. Despite an AT rich genome, there are about 124.6 million reads mapped to T. thermophila genome. Using these mapped reads, we have significantly improved the previous genome annotation and investigated the gene expression. Besides, our result also provided a comprehensive understanding of the alternative splicing in T. thermophila, and suggested the existence of the regulated unproductive splicing and translation (RUST) in the single-celled eukaryote. RNA-seq for six samples of Tetrahymena growth, starvation and conjugation.

2012-03-15 | E-GEOD-27971 | biostudies-arrayexpress

Tetrahymena thermophila

Project description:Tetrahymena thermophila Raw sequence reads

| PRJNA611686 | ENA