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Sequencing of smallRNAs of fish embryos in somite stage

ABSTRACT: Sequencing of smallRNA of different Nothobranchius furzeri (Nfu) strains and 8 further anual and not anual fish species for investigation of its differential expression with and without diapause.

ORGANISM(S): Austrofundulus leohoignei Rivulus cylindraceus Aplocheilus lineatus Iconisemion striatum Callopanchax occidentalis Nothobranchius furzeri Nematolebias papilliferus Epiplatys dageti monroviae

PROVIDER: GSE81231 | GEO | 2019/05/09

REPOSITORIES: GEO

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Nothobranchius furzeri

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Sequencing of smallRNAs of fish embryos in somite stage

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Aging triggers H3K27 trimethylation hoarding in the chromatin of Nothobranchius furzeri skeletal muscle.

Project description:Aging associates with progressive loss of skeletal muscle function leading up to sarcopenia, a process characterized by impaired mobility and weaken muscle strength. Sarcopenia underpinning molecular mechanisms are still poorly characterized. Since, aging associates with profound epigenetic changes, the investigation of the epigenetic landscape alteration in the skeletal muscle promises to highlight molecular mechanisms of age-associated sarcopenia. Here, the study was conducted exploiting the short-lived Nothobranchius furzeri (Nfu), a relatively new model for aging studies. The epigenetic analysis suggested for a less accessible and more condensed chromatin in old Nfu skeletal muscle. Specifically, an accumulation of heterochromatin regions was observed as consequence of increased levels of H3K27me3, HP1a, polycomb complex subunit expression and SAHFs. Consistently, euchromatin histone marks, including H3K9ac, decreased. The integrative bioinformatics analysis of RNASeq and ChIPSeq dataset, related to skeletal muscle of Nfu at different ages, revealed a down-modulation of transcripts involved in cell cycle, differentiation and DNA repair and an up-regulation of inflammation and senescence genes. Undoubtedly, more studies are needed to disclose the detailed mechanisms, but this approach shed light on unprecedented specific features of Nfu skeletal muscle aging, responsible of sarcopenia onset and consequent impairment of swimming and mobility activity typical of old Nfu.

2020-07-14 | GSE135032 | GEO

Aging triggers H3K27 trimethylation hoarding in the chromatin of Nothobranchius furzeri skeletal muscle

Project description:Aging associates with progressive loss of skeletal muscle function leading up to sarcopenia, a process characterized by impaired mobility and weakening of muscle strength. Molecular mechanisms underpinning sarcopenia are still poorly characterized. Since aging associates with profound epigenetic changes, epigenetic landscape alteration analysis in the skeletal muscle promises to highlight molecular mechanisms of age-associated sarcopenia. The study was conducted exploiting the short-lived Nothobranchius furzeri (Nfu), a relatively new model for aging studies. The epigenetic analysis suggested for a less accessible and more condensed chromatin structure in old Nfu skeletal muscle. Specifically, an accumulation of heterochromatin regions was observed as consequence of increased levels of H3K27me3, HP1a, polycomb complex subunits and senescence associated heterochromatic foci (SAHFs). Consistently, euchromatin histone marks, including H3K9ac, decreased. The integrative bioinformatics analysis of RNASeq and ChIPSeq, related to skeletal muscle of Nfu at different ages, revealed a down-modulation of transcripts involved in cell cycle, differentiation and DNA repair and an up-regulation of inflammation and senescence genes. Undoubtedly, more studies are needed to disclose the detailed mechanisms, but this approach shed light on unprecedented specific features of Nfu skeletal muscle aging, potentially associated with sarcopenia onset and consequent impairment of swimming and mobility typical of old Nfu.

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Project description:Comparison of gene expression profiles from Nothobranchius furzeri (strain: GRZ) skin after physical exercise. For physical exercise, fish were placed in swim-tunnel for 4 weeks and were swimming 6 times per day for 5 min duration (water velocity 14 cm/s). The RNA-seq data comprise 10 samples. Jena Centre for Systems Biology of Ageing - JenAge (www.jenage.de)

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Sequencing of Nothobranchius fuzeri muscle (strain: GRZ) after physical exercise

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Sequencing of Nothobranchius fuzeri (strain: GRZ) brain after physical exercise

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