Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome analysis of Drosophila Kr-h1 mutants

ABSTRACT: Transcriptome analysis (RNA-Seq) was performed to identify Kr-h1 target genes. Message RNAs were extracted from wildtype and kr-h1[7] homozygous 3rd instar larvae at 100 hr after egg laying (two biological replicates for each genotype).

ORGANISM(S): Drosophila melanogaster

PROVIDER: GSE85863 | GEO | 2016/12/31

SECONDARY ACCESSION(S): PRJNA339575

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

D. melanogaster eye-antennal imaginal discs developmental transcriptome

Project description:Transcriptomes of Drosophila melanogaster eye-antennal imaginal discs at three sequential larval stages: late 2nd instar (72h after egg laying (AEL)), mid 3rd instar (96h AEL) and late 3rd instar (120h AEL).

2018-01-08 | GSE94915 | GEO

ChIP-seq for Kr-h1 in Harpegnathos brains

Project description:We performed ChIP-seq with a new Kr-h1 antibody in the central brains of in established gamergates (day 120) and age-matched workers

2021-11-04 | GSE161206 | GEO

RNA-seq in Harpegnathos central brains after Kr-h1 knockdown

Project description:Central brain RNA-seq after control and Kr-h1 knockdown in d10 worker or gamergate.

2021-11-04 | GSE161205 | GEO

RNA-seq in Harpegnathos ovaries after Kr-h1 knockdown in the brain

Project description:We injected mature (4-months-old) workers and gamergates with siRNAs against Kr-h1 or, as a control, GFP and performed RNA-seq on their ovaries 24 h later

2021-11-04 | GSE180308 | GEO

H1.L3.Solexa

Project description:modENCODE_submission_5073 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We aim to determine the locations of the major histone modifications across the Drosophila melanogaster genome. The modifications under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPrecipitation (ChIP) using the Illumina NGS sequencing platform. We will initially assay localizations using chromatin from three cell lines and two embryonic stages, and will then extend the analysis of a subset of proteins to four additional animal tissues/stages. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Developmental Stage: 3rd Instar Larvae; Genotype: wild type; EXPERIMENTAL FACTORS: Strain Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Antibody H1 (target is H1); Developmental Stage 3rd Instar Larvae

2013-07-03 | E-GEOD-48509 | biostudies-arrayexpress

ChIP-seq for Kr-h1 in Harpegnathos brains

Project description:ChIP-seq for Kr-h1 in Harpegnathos brains

| PRJNA675872 | ENA

Dynamic placement of the linker histone H1 regulates nucleosome arrangement and coordinates gene transcription in early Drosophila embryos[ChIP-Seq]

Project description:H1 ChIP-seq profiling and nucleosome MNase-seq profiling were performed in after egg laying (AEL) 3-4 hours (hr) and 14-15hr Drosophila melanogaster embryos (W1118).

2018-07-12 | GSE101327 | GEO

mRNA microarray of Drosophila melanogaster extratced from cephalic complexes of lgl27S3/lglE2S31 (lgl-null) and FRT82B (wild-type) 3rd instar larvae

Project description:Affymetrix microarray to detect changes in gene expression between lgl27S3/lglE2S31 and FRT82B larvae 4-day old 3rd instar lgl27S3/lglE2S31 larvae were compared to 0-day old 3rd instar FRT82B larvae

2017-12-18 | GSE40294 | GEO

MicroRNA microarray of Drosophila melanogaster extracted from cephalic complexes of lgl-hypomorph 3rd instar larvae

Project description:Single channel custom oligonucleotide array of 147 microRNAs to detect changes in expression of a lgl-hypomorph mutant versus wild-type 0, 3, and 5 day old 3rd instar lgl-hypomorph larvae were compared to 0 day 3rd instar wild-type larvae to test for differences in microRNA expression

2017-12-18 | GSE40293 | GEO

RNA-seq in Harpegnathos central brains after Kr-h1 knockdown

Project description:RNA-seq in Harpegnathos central brains after Kr-h1 knockdown

| PRJNA675871 | ENA