Transcriptomics

Dataset Information

0

Identifying markers predicting successful graft outcome for clinical translation of hESC-based cell therapy for Parkinson’s disease


ABSTRACT: Stem cell treatments for neurodegenerative diseases are expected to reach clinical trials soon. Most of the approaches currently under development involve transplantation of immature progenitors that subsequently undergo phenotypic and functional maturation in vivo, and predicting the long term graft outcome already at the progenitor stage remains a challenge. Here, we took an unbiased approach to identify predictive markers expressed in dopamine neuron progenitors that correlate with graft outcome in an animal model of Parkinson's disease through gene expression analysis of >30 batches of grafted hESC-derived progenitors. We found that many of the commonly-used markers did not accurately predict in vivo subtype-specific maturation. Instead, we identified a specific set of markers associated with the caudal midbrain that correlate with high dopaminergic yield after transplantation in vivo. Using these markers, we developed a GMP differentiation protocol for highly efficient and reproducible production of transplantable dopamine progenitors from hESCs.

ORGANISM(S): Homo sapiens

PROVIDER: GSE86654 | GEO | 2017/01/01

SECONDARY ACCESSION(S): PRJNA342487

REPOSITORIES: GEO

Similar Datasets

2008-09-15 | E-GEOD-9102 | biostudies-arrayexpress
2023-05-01 | GSE200610 | GEO
2008-09-15 | GSE9102 | GEO
2014-12-01 | GSE54888 | GEO
2021-03-20 | GSE166166 | GEO
2018-06-06 | PXD007837 | Pride
2023-10-13 | GSE242338 | GEO
2015-04-08 | E-GEOD-57964 | biostudies-arrayexpress
| EGAS00001001287 | EGA
2016-07-03 | E-GEOD-60634 | biostudies-arrayexpress