Transcriptomics

Dataset Information

0

Rv3133c/dosR is a transcription factor that mediates the hypoxic response of Mycobacterium tuberculosis


ABSTRACT: Unlike many pathogens that are overtly harmful to their hosts, Mycobacterium tuberculosis can persist for years within humans in a clinically latent state. Latency is often linked to hypoxic conditions within the host. Among M. tuberculosis genes induced by hypoxia is a putative transcription factor, Rv3133c/DosR. We performed targeted disruption of this locus followed by transcriptome analysis of wild-type and mutant bacilli. Nearly all the genes powerfully regulated by hypoxia require Rv3133c/DosR for their induction. Computer analysis identified a consensus motif, a variant of which is located upstream of nearly all M. tuberculosis genes rapidly induced by hypoxia. Further, Rv3133c/DosR binds to the two copies of this motif upstream of the hypoxic response gene alpha-crystallin. Mutations within the binding sites abolish both Rv3133c/DosR binding as well as hypoxic induction of a downstream reporter gene. Also, mutation experiments with Rv3133c/DosR confirmed sequence-based predictions that the C-terminus is responsible for DNA binding and that the aspartate at position 54 is essential for function. Together, these results demonstrate that Rv3133c/DosR is a transcription factor of the two-component response regulator class, and that it is the primary mediator of a hypoxic signal within M. tuberculosis. Keywords: strain or line design, genetic modification design and comparative genome hybridization design

ORGANISM(S): Mycobacterium tuberculosis

PROVIDER: GSE8829 | GEO | 2007/08/21

SECONDARY ACCESSION(S): PRJNA102159

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2007-09-29 | E-SMDB-4099 | biostudies-arrayexpress
2008-02-20 | E-GEOD-9331 | biostudies-arrayexpress
2008-02-20 | GSE9331 | GEO
2018-10-22 | PXD008587 | Pride
2009-06-26 | GSE16811 | GEO
2010-05-21 | GSE21932 | GEO
2009-06-26 | E-GEOD-16811 | biostudies-arrayexpress
2010-05-20 | E-GEOD-21932 | biostudies-arrayexpress
2010-05-22 | E-GEOD-21963 | biostudies-arrayexpress
2012-06-13 | GSE19838 | GEO