Transcriptomics

Dataset Information

0

Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both plant and nematode during susceptible and resistance responses.


ABSTRACT: Purpose: To understand the molecular mechanisms involved in disease development during plant-nematode interactions. Methods: We have taken a comprehensive transcriptomic approach to investigate the expression of both tomato and RKN genes in tomato roots at five infection time points from susceptible plants (PR: Pusa Ruby) and two infection time points from resistant plants (M36: Transgenic MM line), grown under soil conditions. Results: Differentially expressed genes during susceptible (1827 tomato, 462 RKN) and resistance (25 tomato, 160 RKN) interactions were identified and a set of genes were validated by qRT-PCR. Conclusion: Our findings, for the first time, provide insights into the transcriptome dynamics of both tomato and RKN during susceptible and resistance interactions and reveal involvement of a complex network of biosynthetic pathways during disease development.

OTHER RELATED OMICS DATASETS IN: PRJNA348521

ORGANISM(S): Solanum lycopersicum Meloidogyne incognita

PROVIDER: GSE88763 | GEO | 2017/08/21

SECONDARY ACCESSION(S): PRJNA348521

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2017-06-12 | GSE87651 | GEO
2022-04-01 | GSE190503 | GEO
2016-05-20 | GSE75923 | GEO
2019-08-22 | GSE136147 | GEO
2016-05-20 | GSE75922 | GEO
2024-04-01 | GSE262653 | GEO
2020-06-20 | GSE152857 | GEO
2012-06-15 | GSE30048 | GEO
2024-07-29 | GSE232828 | GEO
2021-07-02 | GSE166013 | GEO