Transcriptomics

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Identification of a specific 13-miRNA expression signature during follicle activation in Zebrafish


ABSTRACT: Purpose: We aimed to investigate important miRNA events and to define specific miRNA expression signature underlying the follicle activation of zebrafish. Methods: By using small and regular RNA-sequencing, we performed transcriptomic analyses of PG (primary growth stage I; inactive) and PV (pre-vitellogenic stage II; activated) follicles to decipher important miRNA and gene events underlying follicle activation of zebrafish. We identified differentially expressed miRNAs for subsequent qPCR validation and miRNA::target gene prediction. Interaction of candidate miRNA:: target gene pairs were further validated by luciferase reporter assay. Global gene networks involved during PG-to-PV transition were also assessed by Gene Ontology as well as KEGG pathway analyses. Results and Conclusion: Our expression results indicated that PG follicles can be well differentiated from PV follicles by simply using a specific 13-miRNA expression signature (let-7a, -7b, -7c-5p, -7d-5p, -7h, -7i; miR-21, -23a, -27c-3p, -107a-3p, -125b-5p, -145-3p, -202-5p). Besides, we validated interactions of let-7i::atg4a, miR-202-5p::c23h20orf24 and miR-144::ybx1 by luciferase reporter assay. Purpose: we aimed to investigate important miRNA events and to define specific miRNA expression signature underlying the follicle activation of zebrafish

ORGANISM(S): Danio rerio

PROVIDER: GSE92639 | GEO | 2017/12/20

SECONDARY ACCESSION(S): PRJNA358209

REPOSITORIES: GEO

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