Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The putrescine production in Enterococcus faecalis is transcriptionally induced by tyrosine.

ABSTRACT: The aim was to study the transcriptional profiling of the E. faecalis V583 in presence and absence of tyrosine. We compared the expression profile of the strains grown in M17 medium with glucose as carbon source (GM17) and suplemented with agmatine in presence and absence of tyrosine.

ORGANISM(S): Enterococcus faecalis Enterococcus faecalis V583

PROVIDER: GSE97219 | GEO | 2017/03/31

SECONDARY ACCESSION(S): PRJNA381004

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcriptome profiling of tdc cluster delection mutant of Enterococcus faecalis V583

Project description:The aim was to study the transcriptional profiling of the tdc cluster delection mutant E. faecalis V583 Î?tdc (non-tyramine producer) compared to the wild type strain E. faecalis V583 (tyramine producer). We compared the expression profile of the strains grown in M17 medium with glucose as carbon source and suplemented with tyrosine. E. faecalis V583 Î?tdc cells (test) compared with E. faecalis V583 cells (reference). Both strains grown in GM17 medium suplemented 15 mM tyrosine.

2016-02-15 | E-GEOD-77864 | biostudies-arrayexpress

E. faecalis transcriptional responses to copper stress

2011-08-22 | GSE30949 | GEO

E. faecalis transcriptional responses to manganese stress

2011-08-22 | GSE30948 | GEO

E. faecalis transcriptional responses to zinc stress

2011-08-22 | GSE30947 | GEO

E. faecalis transcriptional responses to zinc stress

Project description:Transcriptional profiling of Enterococcus faecalis V583 comparing the transcriptome of cells grown in M17 + glucose 0.5% (GM17) with the transcriptome of cells grown in M17 + glucose 0.5% + 4 mM ZnSO4 2 condition experiment: V583 grown in GM17 vs. V583 grown in GM17 + 4mM ZnSO4. Two biological replicates and a dye-swap. Three replicates per array.

2011-08-21 | E-GEOD-30947 | biostudies-arrayexpress

E. faecalis transcriptional responses to manganese stress

Project description:Transcriptional profiling of Enterococcus faecalis V583 comparing the transcriptome of cells grown in M17 + glucose 0.5% (GM17) with the transcriptome of cells grown in M17 + glucose 0.5% + 4 mM MnSO4 2 condition experiment: V583 grown in GM17 vs. V583 grown in GM17 + 0.4mM MnSO4. Three biological replicates, one of which is a dye-swap. Three replicates per array.

2011-08-21 | E-GEOD-30948 | biostudies-arrayexpress

E. faecalis transcriptional responses to copper stress

Project description:Transcriptional profiling of Enterococcus faecalis V583 comparing the transcriptome of cells grown in M17 + glucose 0.5% (GM17) with the transcriptome of cells grown in M17 + glucose 0.5% + 0.05 mM CuSO4 2 condition experiment: V583 grown in GM17 vs. V583 grown in GM17 + 0.05mM CuSO4. Three biological replicates, one of which is a dye-swap. Three replicates per array.

2011-08-21 | E-GEOD-30949 | biostudies-arrayexpress

Transcriptome profiling of tdc cluster delection mutant of Enterococcus faecalis V583

Project description:The aim was to study the transcriptional profiling of the tdc cluster delection mutant E. faecalis V583 Δtdc (non-tyramine producer) compared to the wild type strain E. faecalis V583 (tyramine producer). We compared the expression profile of the strains grown in M17 medium with glucose as carbon source and suplemented with tyrosine.

2016-02-15 | GSE77864 | GEO

Transcriptome profiling of tdc and agdi clusters deletion mutant of Enterococcus faecalis V583.

Project description:The aim was to study the transcriptional profiling of the tdc and agdi clusters delection mutant E. faecalis V583 ΔtdcΔagdi (non-tyramine non-putrescine producer) compared to the wild type strain E. faecalis V583 (tyramine producer). We compared the expression profile of the strains grown in M17 medium with glucose as carbon source and suplemented with tyrosine.

2019-09-06 | GSE136953 | GEO

The Enterococcus faecalis V583 transcriptional profile during survival within macrophages

Project description:Transcriptional profiling of E. faecalis V583 during intracellular survival compared to V583 grown to mid-log phase (OD 600 = 0.05) in THB + 1% glucose. In this study we report the complete intracellular E. faecalis V583 transcriptome following infection of RAW264.7 macrophages. During intracellular survival, approximately 45% of the V583 genome was differentially regulated including numerous genes involved in the oxidative stress, heat shock and SOS responses. We observed that the E. faecalis-containing phagosome was limited for glycolytic substrates, nucleotides, amino acids and numerous ions necessary for growth and protein function. Approximately 35% of the genes differentially regulated during survival within macrophages were of hypothetical/unknown function, suggesting that the V583 response to phagocytosis involves many previously unstudied loci. Here, we provide the first comprehensive study elucidating the transcriptional response of E. faecalis to phagocytosis, which may provide new targets for future studies.

2011-12-21 | GSE34590 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data