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GNPS - MS/MS networking guided analysis of molecule and gene cluster families - Figure 4

ABSTRACT: Paper Title: MS/MS networking guided analysis of molecule and gene cluster families Author List: Don Duy Nguyen, Cheng-Hsuan Wu, Wilna J. Moree, Anne Lamsa, Marnix H. Medema, Xiling Zhao, Ronnie G. Gavilan, Marystella Aparicio, Librada Atencio, Chanaye Jackson, Javier Ballesteros, Joel Sanchez, Jeramie D. Watrous, Vanessa V. Phelan, Corine van de Wiel, Roland D. Kersten, Samina Mehnaz, René De Mot, Elizabeth A. Shank, Pep Charusanti, Harish Nagarajan, Brendan M. Duggan, Bradley S. Moore, Nuno Bandeira, Bernhard Ø. Palsson, Kit Pogliano, Marcelino Gutiérrez, and Pieter C. Dorrestein Citation: Proc. Natl. Acad. Sci USA 2013 110(28):E2611-2620. doi: 10.1073/pnas.1303471110 PubMedID: 23798442 Brief description of the data submitted: RAW files used to generate Figure 4. Bacterial network of Pseudoalteromonas 04M1A, OT59, and piscicida with a cosine similarity score cutoff of 0.70. This network was generated using nanoDESI-MS/MS.

INSTRUMENT(S): LTQ FT

ORGANISM(S): Pseudoalteromonas Piscicida Jcm 20779t Pseudoalteromonas 04m1a Pseudoalteromonas Ot59

SUBMITTER: Pieter Dorrestein

PROVIDER: MSV000078551 | GNPS | Tue Feb 18 15:52:00 GMT 2014

REPOSITORIES: GNPS

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MS/MS networking guided analysis of molecule and gene cluster families.

Nguyen Don Duy DD Wu Cheng-Hsuan CH Moree Wilna J WJ Lamsa Anne A Medema Marnix H MH Zhao Xiling X Gavilan Ronnie G RG Aparicio Marystella M Atencio Librada L Jackson Chanaye C Ballesteros Javier J Sanchez Joel J Watrous Jeramie D JD Phelan Vanessa V VV van de Wiel Corine C Kersten Roland D RD Mehnaz Samina S De Mot René R Shank Elizabeth A EA Charusanti Pep P Nagarajan Harish H Duggan Brendan M BM Moore Bradley S BS Bandeira Nuno N Palsson Bernhard Ø BØ Pogliano Kit K Gutiérrez Marcelino M Dorrestein Pieter C PC

Proceedings of the National Academy of Sciences of the United States of America 20130624 28

The ability to correlate the production of specialized metabolites to the genetic capacity of the organism that produces such molecules has become an invaluable tool in aiding the discovery of biotechnologically applicable molecules. Here, we accomplish this task by matching molecular families with gene cluster families, making these correlations to 60 microbes at one time instead of connecting one molecule to one organism at a time, such as how it is traditionally done. We can correlate these f ...[more]

PMID: 23798442

Dataset Information

GNPS - MS/MS networking guided analysis of molecule and gene cluster families - Figure 4

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MS/MS networking guided analysis of molecule and gene cluster families.

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