Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - Cave Bacteria_Metabolic_Profiling

ABSTRACT: Metabolic analysis on bacteria samples that were taken from multiple cave sites. Data was acquired using a Bruker Daltonics maXis Impact and C18 RP-UHPLC. Positive polarity acquisition of LC-MS/MS.

INSTRUMENT(S): maXis

ORGANISM(S): Environmental Samples <bacillariophyta> (ncbitaxon:33858)

SUBMITTER: Kit Pogliano

PROVIDER: MSV000080922 | GNPS | Thu Apr 13 16:45:00 BST 2017

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

DDW fecal samples

Project description:Metabolite analysis of DDW fecal samples, standard methanol extraction. Data were acquired using a Bruker Daltonics maXis Impact and C18 RP-UHPLC. Positive polarity acquisition of LC-MS/MS.

2018-05-09 | MSV000082354 | MassIVE

Metabolomics2018_demo_data

Project description:Example metabolite analysis of food and stool samples. Samples were extracted in ethanol using FoodOmics protocols. Data were acquired using a Bruker Daltonics maXis Impact and C18 RP-UHPLC. Positive polarity acquisition of LC-MS and LC-MS/MS.

2018-06-11 | MSV000082453 | MassIVE

Top-Down proteomics of unfractionated Bovine heart mitochondria

Project description:Top-Down proteomics pilot experiment of unfractionated Bovine Heart Mitochondria (BHM) using ultra high resolution Q-ToF tandem mass spectrometry (maXis 4G ETD, Bruker Daltonics).

2018-04-05 | PXD005350 | Pride

Malawi Legume Study

Project description:Data was acquired using a Bruker Maxis Impact and C18 RP-UHPLC. Positive polarity acquisition of LC-MS/MS.

2017-08-29 | MSV000081486 | MassIVE

GNPS - SEED Grant - Kim - late preterm infant

Project description:Late preterm infant samples from multiple body sites. Samples were extracted with ethanol and processed on a Bruker Daltonics maXis Impact and C18 RP-UPLC for untargeted metabolomic analysis. Positive polarity acquisition of LC-MS/MS.

2019-02-19 | MSV000083462 | GNPS

Cerebral Cavernous Malformation Plasma Samples

Project description:Plasma samples of patients diagnosed with CCM. Samples were run with a standard extraction (Plate 1 5x) and then again through a Phree Kit (Phree Kit Plate) to remove phospholipids. Data was acquired using a Bruker Maxis Impact and C18 RP-UHPLC using positive and negative polarity of LC-MS/MS.

2019-06-11 | MSV000083955 | MassIVE

Raw N-glycan MALDI mass spectrometry imaging data on formalin-fixed mouse kidney

Project description:The N-glycome was mapped and visualised on formalin-fixed mouse kidney tissue using an ultrafleXtreme MALDI-ToF/ToF MS instrument (Bruker Daltonics).

2018-11-02 | PXD009808 | Pride

Prototheca zopfii genotype proteomics analysis

Project description:The present study was initiated to evaluate the quantitative proteomic profiling of Protothecazopfiigenotypes. The cells (P.zopfii genotype 1 –noninfectious and genotype 2 -infectious) were cultured in triplicates until the mid-logarithmic growth phase; the proteins were extracted after sonication on ice, followed by 2D DIGE separation as recommended by the manufacturer (GE Healthcare). The differentially expressed proteins spots were identified using Decodon software analysis (Delta 2D version 4.0 software). Protein identification was carried out by MALDI TOF MS/MS (Ultraflex III TOF/TOF, Bruker Daltonics, Bremen, Germany). The spectra was acquired using the automated option (AutoXecute ) of the Flex Analysis software version 3.3 (Bruker Daltonics, Leipzig, Germany), processed using Flex analysis software version 3.3 (Bruker Daltonics, Leipzig, Germany) and the database search was conducted using the MS/MS ion search (MASCOT, http://www.matrixscience.com) against all entries of NCBInr (GenBank)/Swissprot with subsequent parameters: trypsin digestion, up to one missed cleavage, fixed modifications: carbamidomethyl and with the following variable modifications: oxidation (M), peptide tol.: +- 1.2 Da, MS/MS tol.: +- 0.6 Da, peptide charge: +1. The results were assessed using MOWSE score, p- and E values and those possess positive hits with cRAP database were eliminated from the list.

2013-07-22 | PXD000126 | Pride

GNPS - Potato Metabolites - C18-LC-MS/MS - Positive Polarity

Project description:Potato metabolites. Data acquired using Bruker Daltonics maXis Impact and C18 RP-UHPLC. Positive polarity acquisition of LC-MS/MS.

2015-08-16 | MSV000079243 | GNPS

GNPS - SEED Dasgupta - select analysis files

Project description:Data was acquired using a Bruker Daltonics maXis Impact and C18 RP-UHPLC. Positive polarity acquisition of LC-MS/MS.

2018-03-18 | MSV000082178 | GNPS