Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - Fungal Siderophores

ABSTRACT: Non-targeted metabolomics from extracts from fungal cultures.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Phaeoacremonium Aleophilum Eutypa Lata (ncbitaxon:97096) Phaeomoniella Chlamydospora (ncbitaxon:158046)

SUBMITTER: Isabell Buettel

PROVIDER: MSV000082999 | GNPS | Thu Oct 04 14:05:00 BST 2018

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Fungal siderophores with iron-addition

Project description:Untargeted metabolomics from fungal cultures extracts with iron-addition.

2019-07-01 | MSV000084030 | MassIVE

GNPS - Fungal siderophores with iron-addition

Project description:Untargeted metabolomics from fungal cultures extracts with iron-addition.

2019-07-01 | MSV000084030 | GNPS

Fungal extracts from Cenote Tza Itza

Project description:Untargeted metabolomics (LC/MS) of fungal extracts (chloroform:methanol) isolated from Cenote Tza Itza in Yucatan, Mexico.

2022-01-17 | MSV000088691 | MassIVE

fungal sp.

Project description:fungal sp. Targeted Locus (Loci)

| PRJNA1116118 | ENA

Fungal allergen extracts-induced gene expression in airway epithelial cells (NCI-H292)

2011-07-07 | GSE22323 | GEO

Fungal allergen extracts-induced gene expression in airway epithelial cells (NCI-H292)

Project description:We compared the gene expression stimulated with fungal extracts from Aspergillus (A.) fumigatus, Alternaria (A.) alternata, or Penicillium (P.) notatum in NCI-H292 (a human bronchial epithelial cell line) to search Allergic bronchopulmonary mycosis (ABPM)-related genes. We identified a mucin-related MUC5AC gene, the expression of which was selectively induced by A. fumigatus. Total RNA from NCI-H292 cells stimulated for 24 h with the A. fumigatus, A. alternata, or P. notatum fungi extracts was extracted and subjected to microarray analysis. Each experiments were perfomed once for each stimulus.

2011-07-07 | E-GEOD-22323 | biostudies-arrayexpress

Mgl2+ cDC2s coordinate allergic airway type 2 but not type 17 inflammation against fungal spores

Project description:Fungal spores, abundant in the environment, are a major cause of asthma. But the precise host response that triggers fungal allergic airway inflammation remains unclear. We found that CD11c+ DCs and CD4+ T cells are essential for development of airway inflammation in mice when repeatedly exposed to inhaled spores. To delinate which DC subsets are mediating fungal allergic inflammation we undertook single cell RNAseq of DCs isolated from the lungs of mice exposed to fungal spores. This identified precise subsets altered upon spore exposure and following targeted removal identified distinct DC subsets (Mgl2+ cDC2s) that are essential for fungal allergic airway inflammation.

2024-12-04 | E-MTAB-13740 | biostudies-arrayexpress

Pseudomonas siderophores

Project description:This project tested if siderophores are publig goods in Pseudomonas, and involved resequencing a well used siderophore mutant made by non-specific mutagenesis techniques

| PRJEB17787 | ENA

GacS-dependent extracellular metabolites of Pseudomonas donghuensis SVBP6

Project description:Liquid-liquid extraction of bacterial cultures. Non-targeted metabolomics

2023-01-24 | MSV000091128 | MassIVE

Fungal secondary metabolism is governed by an RNA-binding protein CsdA/RsdA complex

Project description:Production of secondary metabolites is controlled by a complicated regulatory network in eukaryotic cells. Several layers of regulators are involved in this process, ranging from pathway-specific regulation, to epigenetic control, to global regulation. Unprecedentedly, we have discovered that interaction of an RNA-binding protein CsdA with a regulator RsdA coordinates fungal secondary metabolism. Employing a genetic deletion approach and transcriptome analysis as well as metabolomics analysis, we revealed that CsdA and RsdA synergistically regulate fungal secondary metabolism comprehensively. Mechanistically, comprehensive genetic and biochemical studies proved that RsdA and CsdA co-localize in the nucleus and physically interact to achieve their function. In particular, we have demonstrated that CsdA mediates rsdA expression by binding specific motif “GUCGGUAU” of its pre-mRNA at a post-transcriptional level. We thus uncover a general mechanism in which RNA-binding protein physically interacts with, and controls the expression level of, the RsdA to coordinate fungal secondary metabolism.

2023-10-23 | GSE241019 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data