Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - 3D Trachymyrmex septentrionalis fungus garden deconstruction

ABSTRACT: DCM:MeOH 2:1 extracts from deconstructed Trachymyrmex septentrionalis fungus garden, corn flour, ants' trash and ants. Extracts were analyzed by LC-MS/MS performed in an UltiMate 3000 UPLC system (Thermo Scientific) using a Kinetex 1.7 mm C18 reversed phase UHPLC column (50 X 2.1 mm) and Maxis Q-TOF mass spectrometer (Bruker Daltonics) equipped with ESI source.

INSTRUMENT(S): maXis

ORGANISM(S): Trachymyrmex Septentrionalis (ncbitaxon:34720)

SUBMITTER: Jonathan Klassen Marcy Balunas Pieter C Dorrestein

PROVIDER: MSV000083071 | GNPS | Thu Oct 25 11:49:00 BST 2018

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Trachymyrmex septentrionalis

Project description:Trachymyrmex septentrionalis overview

| PRJNA315916 | ENA

Trachymyrmex septentrionalis

Project description:Trachymyrmex septentrionalis microbiome

| PRJNA687229 | ENA

Trachymyrmex septentrionalis

Project description:Trachymyrmex septentrionalis Transcriptome or Gene expression

| PRJNA315799 | ENA

GNPS - 3D Trachymyrmex septentrionalis fungus garden colonized with JKS1884 - deconstruction

Project description:DCM:MeOH 2:1 extracts from deconstructed Trachymyrmex septentrionalis fungus garden colonized with JKS1884 strain and ants. Extracts were analyzed by LC-MS/MS performed in an UltiMate 3000 UPLC system (Thermo Scientific) using a Kinetex 1.7 um C18 reversed phase UHPLC column (50 X 2.1 mm) and Maxis Q-TOF mass spectrometer (Bruker Daltonics) equipped with ESI source.

2018-10-29 | MSV000083080 | GNPS

GNPS - Trachymyrmex septentrionalis fungus garden - time-course colonization with JKS1884

Project description:DCM:MeOH 2:1 extracts from Trachymyrmex septentrionalis fungus garden colonized with JKS1884 strain and ants. Samples for LC-MS/MS were collected at Day 0, Day 2 and Day 4. Ants were also extracted using the same procedure to obtain fungal garden samples. Extracts were analyzed by LC-MS/MS performed in an UltiMate 3000 UPLC system (Thermo Scientific) using a Kinetex 1.7 um C18 reversed phase UHPLC column (50 X 2.1 mm) and Maxis Q-TOF mass spectrometer (Bruker Daltonics) equipped with ESI source.

2019-04-25 | MSV000083723 | GNPS

Trachymyrmex septentrionalis isolate:Tsep2-gDNA-1

Project description:Trachymyrmex septentrionalis isolate:Tsep2-gDNA-1 Genome sequencing and assembly

| PRJNA292625 | ENA

GNPS - Trachymyrmex septentrionalis fungus garden colonized with Trichoderma sp JKS1879 JKS1921 and JKS1884

Project description:DCM:MeOH 2:1 extracts from Trachymyrmex septentrionalis fungus garden colonized with JKS1879, JKS1921 and JKS1884 strains. Extracts were analyzed by LC-MS/MS performed in an UltiMate 3000 UPLC system (Thermo Scientific) using a Kinetex 1.7 um C18 reversed phase UHPLC column (50 X 2.1 mm) and Maxis Q-TOF mass spectrometer (Bruker Daltonics) equipped with ESI source.

2021-12-27 | MSV000088621 | GNPS

Microbiome of Trachymyrmex septentrionalis and Mycetomoellerius turrifex ants, fungus, and associated soil samples

Project description:Microbiome of Trachymyrmex septentrionalis and Mycetomoellerius turrifex ants, fungus, and associated soil samples Metagenome

| PRJNA789907 | ENA

GNPS - Trachymyrmex septentrionalis fungus gardens - NJ2017-NC2019

Project description:DCM:MeOH 2:1 extracts from Trachymyrmex septentrionalis fungus gardens collected during sampling trips in New Jersey (2017) and North Carolina (2019). LC-MS/MS was performed in an UltiMate 3000 UPLC system (Thermo Scientific) using a Kinetex 1.7 um C18 reversed phase UHPLC column (50 X 2.1 mm) and Maxis Impact Q-TOF mass spectrometer (Bruker Daltonics) equipped with ESI source. Data was acquired in positive ion mode.

2020-10-28 | MSV000086381 | GNPS

Bioturbation by the Fungus-Gardening Ant, Trachymyrmex septentrionalis.

Project description:Soil invertebrates such as ants are thought to be important manipulators of soils in temperate and tropical ecosystems. The fungus gardening ant, Trachymyrmex septentrionalis, is an important agent of biomantling, that is, of depositing soil excavated from below onto the surface, and has been suggested as an agent of bioturbation (moving soil below ground) as well. The amount of bioturbation by this ant was quantified by planting queenright colonies in sand columns consisting of 5 layers of different colored sand. The amount of each color of sand deposited on the surface was determined from April to November 2015. In November, colonies were excavated and the color and amount of sand deposited below ground (mostly as backfill in chambers) was determined. Extrapolated to one ha, T. septentrionalis deposited 800 kg of sand per annum on the surface, and an additional 200 kg (17% of the total excavated) below ground. On average, this mixes 1.3% of the sand from other layers within the top meter of soil per millennium, but this mixing is unlikely to be homogeneous, and probably occurs as "hotspots" in both horizontal and vertical space. Such mixing is discussed as a challenge to sediment dating by optically stimulated luminescence (OSL).

| S-EPMC4938500 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data