Dataset Information

GNPS - Earth Microbiome Project - EMP500 - Metabolomics v2 - Q-Exactive

ABSTRACT: EMP500 - http://www.earthmicrobiome.org/emp500/ The Earth Microbiome Project is a systematic attempt to characterize global microbial taxonomic and functional diversity for the benefit of the planet and humankind. The Earth Microbiome Project (EMP) is a massively collaborative effort to characterize microbial life on this planet. We use DNA sequencing and mass spectrometry of crowd-sourced samples to understand patterns in microbial ecology across the biomes and habitats of our planet. The EMP is a comprehensive example of open science, leveraging a collaborative network of 500+ investigators, supporting pre-publication data sharing, and crowdsourcing data analysis to enable universal principles to be explored. The standardized collection, curation, and analysis are enabling a robust interpretation of ecological trends.ls for metagenomic sequencing and assembly, with the goal of applying this workflow to a range of environmental samples, combined with metabolomic profiling. Our goal was to assemble a set of ~500 fresh environmental samples across a range of habitats, with the help of the EMP network of collaborators. We are doing traditional EMP amplicon sequencing, metagenomic sequencing (with assembly-free and assembly-based analysis), and metabolomics on these 500 samples. A biobank of frozen aliquots of samples is being maintained at UCSD (soil samples at PNNL) for future methods testing and analysis.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Environmental Samples <bacillariophyta> (ncbitaxon:33858)

SUBMITTER: Pieter Dorrestein Rob Knight