Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - Penicillium #12 with Ecoli or P. psychrophila and unprocessed data

ABSTRACT: Penicillium solitum grown on cheese curd agar with either E. coli and Pseudomonas psychrophila and extracted with acn. Data files unprocessed and compared to processed files with blank removal algorithm called BLANKA.

INSTRUMENT(S): LCQ Advantage

ORGANISM(S): Penicillium Solitum (ncbitaxon:60172) Pseudomonas Psychrophila (ncbitaxon:122355) Escherichia Coli K-12 (ncbitaxon:83333)

SUBMITTER: Laura M Sanchez

PROVIDER: MSV000084946 | GNPS | Tue Feb 11 15:43:00 GMT 2020

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Penicillium #12 with Ecoli or P. psychrophila and processed with BLANKA

Project description:Penicillium solitum grown on cheese curd agar with either E. coli and Pseudomonas psychrophila and extracted with acn. Data files processed with blank removal algorithm called BLANKA and compared to unprocessed files.

2019-03-14 | MSV000083571 | MassIVE

GNPS - Penicillium #12 with Ecoli or P. psychrophila and processed with BLANKA

2019-03-14 | MSV000083571 | GNPS

Glutamicibacter arilaitensis with Penicillium #12 imaging

Project description:Imaging run on co-culture and isolated cultures of Penicillium sp. #12 with Glutamicibacter arilaitensis. Both strains were isolated from cheese rinds and normalized to OD 0.1 before plating on 2.5% Cheese Curd agar and grown for 7 days at room temperature.

2018-05-24 | MSV000082397 | MassIVE

Fungi_with_Bacteria_IKproject_MS1

Project description:MS1 collected on qTOF, UPLC C18 gradient of 10-100% ACN over first 12 minutes, held at 100% ACN for minute 12-14. Fungi and Bacteria grown alone and pairwise on Cheese Curd Agar, naming is fungi first then bacterial partner (if it is a pairwise culture), then biological replicate number. CCA = cheese curd agar media control Ecoli = E. coli K12 JB418 = Pseudomonas psychrophila sp. JB418 12 = Penicillium solitum SAM = Penicillium camemberti RS17 = Penicillium atramentosum Fus = Fusarium domesticum JB370 = Scopulariopsis strain JB370 1655 = Scopulariopsis strain 165-5 Can = Candida catenulata Deb = Debaryomyces hansenii

2020-03-02 | MSV000085046 | MassIVE

Fungi_with_Bacteria_IKproject_MS2

Project description:MS2 collected on qTOF, UPLC C18 gradient of 10-100% ACN over first 12 minutes, held at 100% ACN for minute 12-14. Fungi and Bacteria grown alone and pairwise on Cheese Curd Agar, naming is fungi first then bacterial partner (if it is a pairwise culture), then biological replicate number. CCA = cheese curd agar media control Ecoli = E. coli K12 JB418 = Pseudomonas psychrophila sp. JB418 12 = Penicillium solitum SAM = Penicillium camemberti RS17 = Penicillium atramentosum Fus = Fusarium domesticum JB370 = Scopulariopsis strain JB370 1655 = Scopulariopsis strain 165-5 Can = Candida catenulata Deb = Debaryomyces hansenii

2020-02-25 | MSV000085007 | MassIVE

Glutamicibacter arilaitensis with Penicillium #12 imaging at low pH

2018-05-24 | MSV000082398 | MassIVE

cheese_bacterial_fungal_metabolomics_study_2022_tripartite_cultures

Project description:Dataset 1 contains bacterial-fungal monocultures and tripartite co-cultures in which Scopulariopsis sp. JB370 are grown with 1) Hafnia alvei JB232 and 2) Pseudomonas psychrophila JB418 or Escherichia coli K12. Dataset 2 contains bacterial-fungal tripartite co-cultures in which Penicillium solitum #12 are grown with 1) Glutamicibacter arilaitensis JB182 or Brevibacterium linens JB5 and 2) Pseudomonas psychrophila JB418 or Escherichia coli K12. All cultures from each dataset were grown on 10% cheese curd agar (CCA) and extracted using acetonitrile. Extracts were analyzed via LC-MS(/MS) and processed with MZmine2 for analysis with MetaboAnalyst 5.0 and GNPS feature based molecular networking.

2023-03-08 | MSV000091440 | MassIVE

IK qTOF data for P. camemberti grown with E. coli or P. psychrophila

Project description:Penicillium camemberti grown on cheese curd agar with either E. coli or Pseudomonas psychrophila. Solid agar plates extracted with acn and run with RP UPLC C18 column on Bruker impact II qTOF.

2019-03-14 | MSV000083574 | MassIVE

GNPS - 20200304_WT_laeA_P.solitum_extracts

Project description:WT and laeA mutant P. solitum were grown on Cheese Curd Agar (CCA) and extracted with Acetonitrile.

2020-03-04 | MSV000085054 | GNPS

cheese_bacterial_fungal_metabolomics_study_2022

Project description:Bacterial-fungal monocultures and co-cultures in which Penicillium solitum #12 are grown with one of 4 bacterial growth partners (Glutamicibacter arilaitensis JB182, Brevibacterium linens JB5, Pseudomonas psychrophila JB418, Escherichia coli K12) grown on 10% cheese curd agar (CCA) and extracted using acetonitrile. Extracts were analyzed via LC-MS(/MS) and processed with MZmine2 for analysis with MetaboAnalyst 5.0 and GNPS feature based molecular networking. Dataset 3 contains monocultures and pairwise co-cultures in which full plate (100 mm) extractions were performed. Dataset 4 contains monocultures in which plug (30 mm) extractions were performed. Dataset 5 contains monocultures and pairwise co-cultures in that were grown regularly or on nitrocellulose membranes using plate count agar with milk and salt (PCAMS).

2023-02-24 | MSV000091360 | MassIVE

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data