Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS Streptomyces sp. BRA-346_ChemicalElicitation_Sup

ABSTRACT: Four cultures of BRA-346 strain using the A1 medium and different chemical elicitors (no elicitor, as a control, (i); ampicilin 100 ug/ml (ii); sodium butyrate 50 uM (iii); procaine 100 uM (iv)). A bed (blank media) and a non elicited (C3b) culture growth were also produced. AcOEt exctratcts were analysed through UPLC-MS/MS and MS data was processed using NP3_MS_workflow. Figure S9 from Vieira et al., 2022: "BRA-346 secondary metabolism is modulated by chemical elicitors in the A1 media".

INSTRUMENT(S): ESI-qQTOF Impact II

ORGANISM(S): Streptomyces Sp. Bra-346

SUBMITTER: Daniela B. B. Trivella

PROVIDER: MSV000088812 | GNPS | Thu Feb 10 05:52:00 GMT 2022

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

GNPS Streptomyces sp. BRA-346_ChemicalElicitation

Project description:Four cultures of BRA-346 strain using the A1 medium and different chemical elicitors (no elicitor, as a control, (i); ampicillin 100 uM (ii); sodium butyrate 50 uM (iii); procaine 100 uM (iv)). AcOEt extracts and C8-fractions analyses were performed using UPLC-MS/MS and MS data was processed using NP3_MS_workflow. Figure 3 from Vieira et al., 2022: "Chemical elicitors, especially ampicilin, induce the production of epoxyketone peptides by BRA-346.

| MSV000088149 | GNPS

GNPS Streptomyces sp. BRA-346_CultureMediaVariation

Project description:BRA-346 strain was growth in four different culture media: A1, TSB, TSBY and ISP2 in order to compare the metabolism production. In particular for A1 media, two independent growth batches were performed: i) three replicates C3a, C3b, C3c and ii) C5. Respective beds were provided for each culture media. AcOEt exctratcts were analysed through UPLC-MS/MS and MS data was processed using NP3_MS_workflow. Figure 2 from Vieira et al., 2022: "The biosynthesis of BRA-346 secondary metabolites being tightly regulated by the culture media used for bacteria growth.

| MSV000088148 | GNPS

Panicum virgatum strain:BRA | cultivar:BRA

Project description:Panicum virgatum BRA Resequencing genome sequencing

| PRJNA332581 | ENA

Actinomadura sp. BRA 177

Project description:Actinomadura sp. BRA 177 Genome sequencing and assembly

| PRJNA639598 | ENA

GNPS Streptomyces sp. BRA-346_Reproducibility

Project description:Four cultures of BRA-346 were analysed (C3a, C3b, C3c, and C5). The C3 a-c cultures are replicates conducted in parallel. C5 is a BRA-346 culture performed in an independent experiment, however following the same experimental conditions used for C3 cultures. AcOEt extracts analyses were performed using UPLC-MS/MS and MS data was processed using NP3_MS_workflow.

| MSV000088147 | GNPS

GNPS Streptomyces sp. BRA-346_HeterologousExpression

Project description:Comparison of wild cultures of BRA-346 and heterologous expression of epn/tmc BGC in M1146. Beds were also produced (culture growth and host bacteria growth). AcOEt extracts analyses were performed using UPLCMS/MS and MS data was processed using NP3_MS_workflow. Figure 5 dataset from Vieira et al., 2022: "Heterologous expression of the epn/tmc BGC of BRA-346"

| MSV000088150 | GNPS

Rhizobium etli bv. phaseoli strain:Bra-5

Project description:Rhizobium etli sv phaseoli Bra-5 genome sequencing and assembly

| PRJNA293881 | ENA

Bisulfite (methylome) sequencing of msh1 memory line treated with 5-azacytidine in Arabidopsis

Project description:Germination of the memory line and isogenic Col-0 wild type on media containing 100 uM 5-azacytidine alleviated the phenotype differences between the two lines, resulting in similar growth rates. Here we generate methylome profile for wild type and msh1 memory line under 100 uM 5-azacytidine treatment to investigate the effect of 5-azacytidine on msh1 memory line methylation profile.

2019-05-18 | GSE114665 | GEO

mRNA sequencing of msh1 memory line in Arabidopsis

Project description:Germination of the memory line and isogenic Col-0 wild type on media containing 100 uM 5-azacytidine alleviated the phenotype differences between the two lines, resulting in similar growth rates, here we generate gene expression profile for wild type and msh1 memory line under 100 uM 5-azacytidine treatment to investigate the effect of 5-azacytidine on msh1 memory gene expression profile

2019-01-12 | GSE109164 | GEO

BRACHYURY orchestrates distinct mesoderm and endoderm gene regulatory networks in differentiating human embryonic stem cells

Project description:The transcription factor BRACHYURY (T, BRA) is one of the first markers of gastrulation and lineage specification in mammals. Despite its wide use and importance in stem cell and developmental biology, its genomic targets are largely unknown. Here, we used differentiated human embryonic stem cells to study the role of BRA in Bmp4-induced mesoderm and Activin-induced endoderm progenitors by ChIP-seq. We show that BRA has distinct genome-wide binding landscapes in these two populations. Our data illuminate the function of BRA in the context of human embryonic development and show that the regulatory role of BRA is context-dependent. ChIP-seq of BRACHYURY (T, BRA) in two cell types: endoderm and mesoderm progenitors derived from human embryonic stem cells after 36 hours of growth in chemically-defined media (described in Bernardo et al., Cell Stem Cell, 2011, 9:144-155). Input DNA samples are included as a control.

2015-05-18 | E-GEOD-60606 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data