Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - MetaData Tool Test Number 6

ABSTRACT: This dataset is created as a test to validate whether the metadata provided is successfully recognised. The metadata provided in this dataset is considered to be successful in another dataset with the same files, this dataset is used to determine if the metadata file's success is reproducible. This dataset is purely a test and should not be considered valid for any scientific experiments

INSTRUMENT(S): LTQ Orbitrap

ORGANISM(S): Anything

SUBMITTER: Samuel Plane

PROVIDER: MSV000090066 | GNPS | Tue Aug 02 09:34:00 BST 2022

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

GNPS - MetaData Tool Test Number 13

Project description:This dataset is created as a test to validate whether the metadata provided is successfully recognised. This dataset is purely a test and should not be considered valid for any scientific experiments. The metadata provided in this dataset was created using a custom-made tool. This dataset tests if the success of the tool is reproducible.

2022-08-15 | MSV000090132 | GNPS

GNPS - MetaData Tool Test Number 5

Project description:This dataset is created as a test to validate whether the metadata provided is successfully recognised. This metadata has been successfully used in a different dataset, this dataset is created in the hope that the success is reproducible. This dataset is purely a test and should not be considered valid for any scientific experiments

2022-08-05 | MSV000090085 | GNPS

GNPS - MetaData Tool Test Number 5

2022-08-02 | MSV000090062 | GNPS

GNPS - MetaData Tool Test Number 11

2022-08-12 | MSV000090118 | GNPS

GNPS - MetaData Tool Test Number 10

2022-08-11 | MSV000090115 | GNPS

GNPS - MetaData Tool Test Number 12

2022-08-15 | MSV000090131 | GNPS

GNPS - MetaData Tool Test Number 14

2022-08-24 | MSV000090196 | GNPS

VM transition - partial dataset submission regression test - 02/26/16 [5]

Project description:This is a test dataset. It has no scientific value. It is merely being submitted to test the basic functionality of the dataset submission workflow. This is an addendum to the dataset description to test the functionality of dataset metadata updates.

2016-02-26 | MSV000079535 | MassIVE

The landscape of gene expression in Arabidopsis

Project description:Transcriptome datasets from thousands of samples of the model plant Arabidopsis thaliana have been collectively generated by multiple individual labs. Although integration and meta-analysis of these samples has become routine in the plant research community, it is often hampered by the lack of metadata or differences in annotation styles by different labs. In this study, we carefully selected and integrated 6,057 Arabidopsis microarray expression samples from 304 experiments deposited to NCBI GEO. Metadata such as tissue type, growth condition, and developmental stage were manually curated for each sample. We then studied global expression landscape of the integrated dataset and found that samples of the same tissue tend to be more similar to each other than to samples of other tissues, even in different growth conditions or developmental stages. Root has the most distinct transcriptome compared to aerial tissues, but the transcriptome of cultured root is more similar to those of aerial tissues as the former samples lost their cellular identity. Using a simple computational classification method, we showed that the tissue type of a sample can be successfully predicted based on its expression profile, opening the door for automatic metadata extraction and facilitating re-use of plant transcriptome data. As a proof of principle we applied our automated annotation pipeline to 708 RNA-seq samples from public repositories and verified accuracy of our predictions with samples’ metadata provided by authors.

2015-08-01 | GSE69995 | GEO

Comparative transcriptomic analysis of Lotus japonicus leves and roots under symbiotic and non-symbiotic conditions.

Project description:Microarray transcriptomic analysis was carried out on Lotus japonicus plants grown either under purely symbiotic conditions (Mesorhizobium loti) or under non-symbiotic conditions (no inoculation and provided with NH4NO3).

2020-07-02 | E-MTAB-8235 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data