Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - Plant SynCom single strain extract

ABSTRACT: Single strain cultures of plant Synthetic microbial community

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Environmental Samples <bacillariophyta> (ncbitaxon:33858)

SUBMITTER: Daniel Petras

PROVIDER: MSV000090766 | GNPS | Tue Nov 22 05:38:00 GMT 2022

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Plant SynCom single strain extract

Project description:Single strain cultures of plant Synthetic microbial community

2022-11-22 | MSV000090766 | MassIVE

Plant SynCom single and co-culture extracts repetition

Project description:Non-targeted metabolomics of synthetic community created from the Arabidopsis phyllosphere microbiota.

2023-11-10 | MSV000093353 | MassIVE

Test SynCom strains interaction 211223

Project description:Microbial Synthetic Community resembling the Nasal human microbiome

2024-01-18 | MSV000093885 | MassIVE

GNPS - Plant SynCom single and co-culture extracts repetition

Project description:Non-targeted metabolomics of synthetic community created from the Arabidopsis phyllosphere microbiota.

2023-11-10 | MSV000093353 | GNPS

GNPS - Test SynCom strains interaction 211223

Project description:Microbial Synthetic Community resembling the Nasal human microbiome

2024-01-18 | MSV000093885 | GNPS

Synthetic Plant Community - single and co-cultured

Project description:Non-targeted metabolomics of microbial community from plant leaves.

2023-08-21 | MSV000092705 | MassIVE

Agave strain vs wine strain

Project description:We studied transcriptional responses comparing an Agave strain ITD00185 with a wine strain T73 in a synthetic agave must

2017-03-01 | GSE95507 | GEO

plant metagenome

Project description:Synthetic bacterial community of duckweed

| PRJDB10361 | ENA

GNPS - Synthetic Plant Community - single and co-cultured

Project description:Non-targeted metabolomics of microbial community from plant leaves.

2023-08-21 | MSV000092705 | GNPS

Comparative chemical-genomic profiling of plant-based hydrolysate toxins enables predictive assessment of responses to complex mixtures

Project description:Many toxins and stressors found in hydrolysates inhibit microbial metabolism and product formation, requiring mitigation strategies including strain engineering. To identify mechanisms of toxicity and targets for genetic engineering, we used a chemical genomics approach with a library of S. cerevisiae deletion mutants cultured anaerobically in dozens of individual compounds found in different types of hydrolysates, to explore shared and divergent gene requirements across inhibitors. Relationships in chemical-genomic profiles identified classes of toxins that provoked similar cellular responses, spanning inhibitor relationships that were not expected from chemical classification. Our results also revealed widespread antagonistic effects across inhibitors, such that the same gene deletions are beneficial for surviving some toxins but detrimental for others. As a proof of principle, we used the gene-deletion responses to single inhibitors to successfully predict strains whose fitness was improved in complex inhibitor mixes found in synthetic hydrolysates. We discuss the implications for strain engineering and the potential of this rich dataset for identifying engineering targets.

2021-11-01 | GSE186866 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data