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Proteome profiling of cell lines for cell line-based PPCP

ABSTRACT: A new approach of proteomic correlation profiling named "PPCP" was developed based on previous proteomic correlation profiling approach. This data is used as proteome profiling of cell lines for cell line-based PPCP.

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: Kazuishi Kubota

PROVIDER: PXD010350 | JPOST Repository | Wed Jul 10 00:00:00 BST 2019

REPOSITORIES: jPOST

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			Action	DRS
	180702_Supplementary_Data_3.xlsx	Xlsx
	20180709_sample_list.txt	Txt
	E16031028.raw	Raw
	E16031029.raw	Raw
	E16031031.raw	Raw

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Publications

Perturbation-Based Proteomic Correlation Profiling as a Target Deconvolution Methodology.

Ohki Yu Y Sakurai Hidetaka H Hoshino Madoka M Terashima Hideki H Shimizu Hiroki H Ishikawa Tomio T Ogiyama Tomoko T Muramatsu Yasunori Y Nakanishi Toshiyuki T Miyazaki Shojiro S Tsuruoka Hiroyuki H Kobayashi Hideki H Kubota Kazuishi K

Cell chemical biology 20181115 1

Molecular target identification of small molecules, so-called target deconvolution, is a major obstacle to phenotype-based drug discovery. Here, we developed an approach called perturbation-based proteomic correlation profiling (PPCP) utilizing the correlation between protein quantity and binding activity of compounds under cellular perturbation by gene silencing and successfully identified lanosterol synthase as a molecular target of TGF-β pathway inhibitor. This PPCP concept was extended to th ...[more]

PMID: 30449674

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