Proteomics

Dataset Information

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Analysis of proteomics data with MS-Decipher and other search engines


ABSTRACT: We presented a user-friendly proteomic database search platform, MS-Decipher, for the identification of peptides from MS data. Two scoring schemes, rank score and hyperscore, could be used for peptide spectra matching. FDR controlling strategies could be used after searching, and it was found that MS-Decipher performs well compared to traditional database searching software. In addition, a special search mode, O-search, is presented to search O-glycopeptides for the O-glycoproteomics analysis. Data and result files in several formats could be used in searching and validation. Dataset of tryptic peptides from HeLa cells was used to evaluate the performance of our software. The searches using the same parameters were also performed by other commonly used software, like Mascot, SEQUEST, MS Amanda 2.0 and MS-GF+, to compare the performance.

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: Mingliang Ye 

PROVIDER: PXD027005 | JPOST Repository | Sat Jan 08 00:00:00 GMT 2022

REPOSITORIES: jPOST

Dataset's files

Source:
Action DRS
HF_TEST_C9_20201021.mgf Mgf
HF_TEST_C9_20201021.raw Raw
HF_TEST_C9_20201023.mgf Mgf
HF_TEST_C9_20201023.raw Raw
HF_TEST_C9_20201029.mgf Mgf
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