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Re-analysis of dataset PXD017646

ABSTRACT: We adopted the method used in the O-Pair article to validate the FDR calculations of O-glycopeptide search in MS-Decipher. The detailed description of the method was provided in the ‘Methods’ and ‘Evaluating O-Pair Search performance’ parts of O-Pair article (Lu et al., 2020). The results were firstly filtered for Target hits and GPSM (glycopeptide-spectrum match)-level q-value < 0.01 and score > 0. And the ‘Estimated FDRs’ were calculated by dividing the number of total GPSM by the number of GPSM, whose sequence matched with the entrapment proteins.

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: MingLiang Ye

PROVIDER: PXD029863 | JPOST Repository | Thu Jan 13 00:00:00 GMT 2022

REPOSITORIES: jPOST

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Dataset's files

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			Action	DRS
	2019_09_16_StcEmix_35trig_EThcD25_rep1.mzML	Mzml
	2019_09_16_StcEmix_35trig_EThcD25_rep1_hcd.mgf	Mgf
	2019_09_16_StcEmix_35trig_EThcD25_rep1_hcd_CD.d.mzid	Mzid
	2019_09_16_StcEmix_35trig_EThcD25_rep1_hcd_CD.t.mzid	Mzid
	2019_09_16_StcEmix_35trig_EThcD25_rep1_hcd_FBS.d.mzid	Mzid

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