Proteomics

Dataset Information

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Phosphoproteome Analysis of Cerebrospinal Fluid Extracellular Vesicles in Primary Central Nervous System Lymphoma


ABSTRACT: Primary central nervous system lymphoma(PCNSL) is a rare extra-nodal non-Hodgkin’s lymphoma and accounts for 3%-4% of central nervous system tumors. Recent studies have highlighted the importance of cerebrospinal fluid derived extracellular vesicles in PCNSL. Extracellular vesicles(EVs) are nanoscale vesicles with bilayer lipid membrane released by almost all cell types. EVs are present in body fluids, including urine, blood and CSF. Cerebrospinal fluid(CSF) is a colorless fluid that surrounds the brain and spinal cord and acts as lymph in the central nervous system. CSF-derived EVs contain proteins from neurons, oligodendrocytes, astrocytes and microglias. Studies of CSF EVs are mainly limited by the amount of EVs isolated from per milliliter of CSF and the volume of CSF acquired from one patient. Here, we provide a label-free quantitative phospho-proteome profiling of EVs separated from PCNSL and non-PCNSL CSF samples by an earlier introduced functional magnetic beads called EVTRAP together with highly sensitive timsTOF Pro.

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: Weiguo Andy Tao 

PROVIDER: PXD040744 | JPOST Repository | Wed Jul 12 00:00:00 BST 2023

REPOSITORIES: jPOST

Dataset's files

Source:
Action DRS
C1phos_Slot2-13_1_1308.d.zip Other
C1whole_Slot2-31_1_1315.d.zip Other
C1whole_Slot2-31_1_1315.mgf Mgf
C2phos_Slot2-14_1_1309.d.zip Other
C2whole_Slot2-32_1_1316.d.zip Other
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Publications

Phosphoproteome analysis of cerebrospinal fluid extracellular vesicles in primary central nervous system lymphoma.

Deng Yuanyuan Y   Li Qing Q   Sun Jie J   Ma Leyao L   Ding Yajie Y   Cai Yuhan Y   Iliuk Anton A   Chen Bobin B   Xie Zhuoying Z   Tao W Andy WA  

The Analyst 20230726 15


Primary central nervous system lymphoma (PCNSL) is a rare but highly aggressive extra-nodal non-Hodgkin's lymphoma, mostly of the diffuse large B-cell lymphoma (DLBCL) type. The present invasive diagnosis and poor prognosis of PCNSL propose an urgent need to develop molecular markers for early detection, real-time monitoring and treatment evaluation. Cerebrospinal fluid (CSF)-derived extracellular vesicles (EVs) are promising biomarker carriers for liquid biopsy of CNS diseases and brain tumors;  ...[more]

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