Project description:This dataset contains peptide array information from 120 patients from 5 different cancer types using classic blinded test/train method. This array is library 1 (GPL17600).
Project description:This dataset contains peptide array information from 120 patients from 5 different cancer types using classic blinded test/train method. This array is library 1 (GPL17600). A 1:500 dilution of human serum is added to a peptide array (GPL17600). This array is a two-up design, with 10420 peptides printed on the top and bottom of a standard glass microscope slide. Samples were run in duplicate. The average of the duplicates are listed here. 20 train and 20 blinded test samples were run.
Project description:This bulk RNA-seq data serves as a testing dataset for a new computational framework MONTAGE that takes an input of integrated atlas of single-cell spatial proteomics and scRNA-seq to study spatial community composition changes along functional enrichment gradient in tissue. This bulk RNA-seq dataset was generated from proximal tissue sections used for profiling spatial proteomics and was used to test the robustness of spatial community identification against the paired spatial proteomics data.