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FFPE proteomes for Group 3 and Group 4 subtypes of paediatric medulloblastoma

ABSTRACT: These data were generated in May of 2016 on a Thermo Q-Exactive at the University of Cape Town in South Africa. Samples were drawn from 48 cases of malignant medulloblastoma that were added to the FFPE archive between 1988 and 2014 under approval from the University of Cape Town Faculty of Health Sciences Human Research Ethics Committee (HREC 149/2014). Assignment to Group 3 or Group 4 categories was performed via Nanostring analysis and IHC (other subtypes were also analyzed in the larger study). Five distinct samples from each of the two Groups were subjected to LC-MS/MS. After conversion to mzML, a total of 245,589 tandem mass spectra were available, of which 36% corresponded to doubly-charged precursor ions. Over all ten experiments, tandem mass spectra were acquired at a rate of 4.55 Hz. MS/MS scans averaged a peak density average of 148 peaks per spectrum. More complete information is available in Omesan Nair's Ph.D. Dissertation: http://hdl.handle.net/11427/26896.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

SUBMITTER: Jonathan M Blackburn

PROVIDER: MSV000083696 | MassIVE | Tue Apr 16 07:43:00 BST 2019

SECONDARY ACCESSION(S): PXD013528

REPOSITORIES: MassIVE

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