Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Example Data for MALDI-TOF Intact Cell + Formic Acid (IDBac) in three formats: raw data, mzxml, tab

ABSTRACT: Full dataset can be found in the publication: ( https://doi.org/10.1073/pnas.1801247115) Method for acquisition can be found: ( https://doi.org/10.1073/pnas.1801247115) The IDBac "experiment" sqlite file was generated with IDBac version 1.1.10 (https://github.com/chasemc/IDBacApp/releases/tag/1.1.10) (https://doi.org/10.5281/zenodo.3241634) and (https://doi.org/10.3791/59219)

INSTRUMENT(S): autoflex

ORGANISM(S): Rhodococcus (ncbitaxon:1827) Paenibacillus (ncbitaxon:44249)

SUBMITTER: Chase Clark

PROVIDER: MSV000084291 | MassIVE |

REPOSITORIES: MassIVE

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Constitutive Piezo 1 knock out in mouse brain development

Project description:E10.5 whole brain were isolated from WT and Piezo1-KO mice (C57BL/6J strain backgound) described in Ranade et al 2014. https://doi.org/10.1073/pnas.1409233111

2022-08-20 | GSE193099 | GEO

Profiling of bulk and ribosome associated mRNA of Arabidopsis roots upon lateral root induction upon TOR activity inhibition with AZD8055 [dataset2]

Project description:We performed targeted purification of polysomal mRNA (TRAP-Seq, Vragović et al, 2015 - http://dx.doi.org/10.1073/pnas.1417947112) using a transgenic line ubiquitously expressing a GFP-tagged RPL18 (Mustroph et al, 2009 - https://doi.org/10.1073/pnas.0906131106) 6h after the synchronous induction of lateral root formation by auxin treatment (IAA) upon inhibition of TOR activity (AZD8055 treatment, AZD). To correct for abundance of mRNA, bulk RNA-Seq was performed on the same samples and used to normalise the reads purified with the ribosomes.

2022-03-23 | GSE199203 | GEO

Hsa-miR-139-5p/HNRNPF axis modulates gene-transcripts balance in thyroid cancer cells

Project description:We explored alternative splicing events upon hsa-miR-139-5p/HNRNPF axis regulation in our cell system using the Multivariate Analysis of Transcript Splicing (rMATS) computational tool (https://doi.org/10.1073/pnas.1419161111). Differential analysis of major splicing outcomes (skipped exon, alternative 5’/3’ splice, mutually exclusive exons and retained intron) revealed a total of 174 events significantly activated or repressed (FDR<0.05) upon HNRNPF regulation.

2019-08-26 | GSE123680 | GEO

Deciphering cell states and genealogies of human hematopoiesis with single-cell multi-omics

Project description:This SuperSeries is composed of the SubSeries listed below. The main processed data are organized in the following two Figshare links: Seurat objects: https://doi.org/10.6084/m9.figshare.23290004 ReDeeM-V output: https://doi.org/10.6084/m9.figshare.24418966.v1

2023-11-18 | GSE219015 | GEO

Lipidomics: Agilent 6546 Q-TOF Iterative Data

Project description:Dataset for the manuscript: https://doi.org/10.3390/metabo10030101 "Lipid Annotator: Towards Accurate Annotation in Non-Targeted Liquid Chromatography High-Resolution Tandem Mass Spectrometry (LC-HRMS/MS) Lipidomics Using a Rapid and User-Friendly Software"

2021-10-23 | MSV000088259 | MassIVE

Gene expression data from polarized T helper cells isolated from mice with opticospinal (OSE) experimental autoimmune encephalomyelitis (EAE)

Project description:T cells from the spleen of a mixed-gender pool of four double-transgenic 2D2 (TCRMOG) x IgHMOG mice (OSE) mice, which spontaneously develop experimental autoimmune encephalomyelitis (EAE), were used to derive TH1- and TH17-polarized cells, as described in https://doi.org/10.1371/journal.pone.0015531. Here, expression was compared, first, between TH1 and naïve TH0 and, second, between TH17 and naïve TH0 cells.

2020-08-21 | E-MTAB-9133 | biostudies-arrayexpress

Single nuclei transcriptomic of Populus tremula x alba apex

Project description:Here we applied a novel approach to isolate nuclei from complex plant tissues (https://doi.org/10.1371/journal.pone.0251149), to dissect the transcriptome profiling of the hybrid poplar (Populus tremula × alba) vegetative shoot apex at single-cell resolution.

2022-10-04 | GSE190649 | GEO

Gene expression in Tuber melanosporum fruiting bodies at different developmental stages

Project description:This study characterizes the transcriptomic alterations of Tuber melanosporum during fruiting body development. Stage III, IV, V and VI were analyzed. For images and description of stages see Zarivi et al.2015 (https://doi.org/10.1016/j.phytochem.2015.02.024)

2018-01-15 | GSE108014 | GEO

Gene expression profile at single cell level of peripheral blood mononuclear cells (PBMCs) from 17 healthy donor

Project description:Quantifying aging rate is important for evaluating age-associated decline and mortality. Here we generate a similar dataset for a reference 17-sample aging cohort to compute a single cell level aging clock. The cell type annotations are available in https://doi.org/10.6084/m9.figshare.23789844.v1.

2023-06-29 | GSE213516 | GEO