Proteomics

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E104v1 Tryptase Antibody Epitope Mapping


ABSTRACT: These open source (.mzxml files) are processed using ExMS (a matlab program, ref 1) and are directly readable. ExMS produces these outfiles (.txt) which are then parsed and fitted using binomial decomposition to determine the number of carried deuterium at a given time point as indicated in the filenames. The all H file is used to define appropriate retention times as described in the original manuscript for the ExMS v1 program (ref 1). The general methodology used is described in ref 2, below. REF 1 Kan, Z. Y., et al. (2011). "ExMS: data analysis for HX-MS experiments." J Am Soc Mass Spectrom 22(11): 1906-1915. REF 2 Mayne, L., et al. (2011). "Many Overlapping Peptides for Protein Hydrogen Exchange Experiments by the Fragment Separation-Mass Spectrometry Method." J Am Soc Mass Spectrom 22(11): 1898-1905.

INSTRUMENT(S): MZXML, from Thermo (converted using msconvert)

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

SUBMITTER: Bob Lazarus   Henry Maun   Benjamin Walters   JT Koerber  

PROVIDER: MSV000086368 | MassIVE | Mon Oct 26 16:22:00 GMT 2020

REPOSITORIES: MassIVE

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