Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Proline rich macrocyclic peptides (PRMPs) from marine sponges

ABSTRACT: The mass spec data for PRMPs detected in marine sponges is deposited. Also the data differentiating leucine and isoleucine residues in cyclic peptides is deposited.

INSTRUMENT(S): Bruker ImpactII ultra-high-resolution Qq-ToF

ORGANISM(S): Porifera (ncbitaxon:6040)

SUBMITTER: Dr. Vinayak Agarwal

PROVIDER: MSV000087277 | MassIVE | Wed Apr 21 21:10:00 BST 2021

REPOSITORIES: MassIVE

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Mass spec data for marine sponges of disparate phylogeny

Project description:LC-MS/MS dataset for marine sponges of disparate phylogeny collected from different geographical locations.

2022-04-12 | MSV000089245 | MassIVE

Marine sponges

Project description:Marine sponges Raw sequence reads

| PRJNA826283 | ENA

marine metagenome

Project description:Marine sponges and seawater Targeted Locus (Loci)

| PRJNA253987 | ENA

Marine sponges

Project description:Microbiome of Portuguese marine sponges : a biogeographical approach

| PRJNA369786 | ENA

Marine sponges

Project description:Marine sponges raw sequence reads in different seasons

| PRJNA938252 | ENA

Viral metagenome from marine sponges

Project description:Viral metagenome from marine sponges Metagenome

| PRJNA489143 | ENA

Spec-seq data for ZNF140, ZNF10, ZFP3, ZNF675, ZNF382

Project description:This dataset consists of Spec-seq samples data for four tandem zinc finger proteins in human genome, each with two replicates. The Spec-seq is a medium throughput technique to characterize the binding specificity of a TF of interest to thousands of binding sites with resolution down to 0.2kT. Similar samples were deposited to NCBI GEO database before (GSE188166). The data analysis workflow for each ZFP can be accessed through https://github.com/zeropin/ZFPCookbook.

2021-12-15 | GSE189817 | GEO

Marine Sponges

Project description:Bacterial communities in marine sponges in Bidong Island, Terengganu

| PRJNA431498 | ENA

marine metagenome

Project description:Red Sea marine sponges and seawater Targeted Locus (Loci)

| PRJNA185767 | ENA

PepSAVI-MS reveals proline-rich antimicrobial peptide in Amaranthus tricolor

Project description:PepSAVI-MS, a mass spectrometry-based peptidomics pipeline, was implemented for antimicrobial peptide (AMP) discovery in the medicinal plant Amaranthus tricolor. This investigation revealed a novel 1.7 kDa AMP, deemed Atr-AMP1. Initial efforts to determine the sequence of Atr-AMP1 utilized chemical derivatization and enzymatic digestion to provide information about specific residues and post-translational modifications. EThcD (electron-transfer/higher-energy collision dissociation) produced extensive backbone fragmentation and facilitated de novo sequencing, the results of which were consistent with orthogonal characterization experiments. Additionally, multistage HCD (higher-energy collisional dissociation) facilitated discrimination between isobaric leucine and isoleucine. These results revealed a positively-charged proline-rich peptide present in a heterogeneous population of multiple peptidoforms, possessing several post-translational modifications including a disulfide bond, methionine oxidation, and proline hydroxylation.

2020-05-26 | PXD014547 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data