Dataset Information

Columbia River sediment HUM-V (Hyporheic Uncultured Microbial and Viral) database metaproteome

ABSTRACT: Metaproteomic data for Rodriguez-Ramos, et al. interrogating microbial and viral communities of hyporheic river sediments within the Columbia River. Samples were digested with trypsin, and analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline.

INSTRUMENT(S): Q Exactive Plus

ORGANISM(S): Environmental Samples <bacteria> (ncbitaxon:48479)

SUBMITTER: Kelly Wrighton

PROVIDER: MSV000087330 | MassIVE | Wed Apr 28 18:20:00 BST 2021

SECONDARY ACCESSION(S): PXD025696

REPOSITORIES: MassIVE

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Publications

Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments.

Rodríguez-Ramos Josué A JA Borton Mikayla A MA McGivern Bridget B BB Smith Garrett J GJ Solden Lindsey M LM Shaffer Michael M Daly Rebecca A RA Purvine Samuel O SO Nicora Carrie D CD Eder Elizabeth K EK Lipton Mary M Hoyt David W DW Stegen James C JC Wrighton Kelly C KC

mSystems 20220721 4

Rivers have a significant role in global carbon and nitrogen cycles, serving as a nexus for nutrient transport between terrestrial and marine ecosystems. Although rivers have a small global surface area, they contribute substantially to worldwide greenhouse gas emissions through microbially mediated processes within the river hyporheic zone. Despite this importance, research linking microbial and viral communities to specific biogeochemical reactions is still nascent in these sediment environmen ...[more]

PMID: 35861508

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